Detail information of GWHGAAEX000342/evm.TU.scaffold_1.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408419366|ref|YP_006760780.1| | 3.00E-86 | spermidine synthase SpeE2 [Desulfobacula toluolica Tol2] |
| KOG | KOG1562 | 4.00E-160 | Spermidine synthase |
| nr | gi|743755827|ref|XP_010913625.1| | 0 | PREDICTED: spermine synthase-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q94BN2|SPSY_ARATH | 7.00E-173 | Spermine synthase |
| trEMBL | tr|I1HZA2|I1HZA2_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G09540.1} |
| TAIR | AT5G53120 | 4.00E-160 | spermidine synthase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 565966 | 632916 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000342
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF17284.1 | Spermine_synt_N | 74 | 122 | 2.40E-19 |
| PF01564.16 | Spermine_synth | 125 | 310 | 2.60E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00797 | speE, SRM | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 | ||
| Arginine and proline metabolism | map00330 | ||
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006595 | Biological Process | polyamine metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.910 |
| SRR2545915 | Juvenile tuber | 43.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.730 |
| SRR5643514 | five period of Gastrodia elata | 42.360 | |
| SRR5643515 | five period of Gastrodia elata | 37.340 | |
| SRR5643524 | five period of Gastrodia elata | 41.230 | |
| SRR5643525 | five period of Gastrodia elata | 48.230 | |
| SRR5643528 | five period of Gastrodia elata | 52.570 | |
| SRR5643658 | five period of Gastrodia elata | 48.290 | |
| SRR5643659 | five period of Gastrodia elata | 39.640 | |
| SRR5643660 | five period of Gastrodia elata | 41.380 | |
| SRR5643661 | five period of Gastrodia elata | 34.980 | |
| SRR5643662 | five period of Gastrodia elata | 33.740 | |
| SRR5643663 | five period of Gastrodia elata | 40.090 | |
| SRR5643664 | five period of Gastrodia elata | 36.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 56.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.51 |
| Juven | Juvenile tuber | 73.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.20 | |
| Mother_Juven | Mother tuber of Juvenile | 83.88 |