Gene detail

Detail information of GWHGAAEX000343/evm.TU.scaffold_1.12

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2751	Beclin-like protein
nr	gi\|743830511\|ref\|XP_010934442.1\|	PREDICTED: beclin-1-like protein [Elaeis guineensis]
Swissprot	tr\|Q9M367\|BECN1_ARATH	Beclin-1-like protein
trEMBL	tr\|M0TKD8\|M0TKD8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P24520_001}
TAIR	AT3G61710	AUTOPHAGY 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	678014	726916	-

Transcript Sequence
>GWHTAAEX000343 AAAAAAAAAAAAAAAAACTTTTATTTTGAAACTTCTAGATATCAATTTCCTATTCATCGGCGACATCTCCAGTCGTCAGCTTGCAGTTGTTTCGTCATCGTACGTCGCCGTTCTTTCATCGTCTCCCGCAGTCCTGCAATCGTCCTTCCATCTAGCGCTATTATCCCGTTGTCCTACTTCCATTCAGCCCCAGACGTTTGTCGCAGTTCCGCAGCCGTTCGCCGAGAGTGCTGGCCAGGGGAAGAAAACGTTCATCGGCGACACCTCCCAGCCGTCTCTTCTGCGGGACGAAATGGCGTTCGCAGAGCTAATGTCTCAATCTTTAGAAGTTTGACGTGTAACCTTTGCAAGCTGAGGAGCAGTCATCTGATGTTCTATGGTCGGAAACATTCTACTTATCACACAACAAAGGCAGGCGTATGATTCTAGTTGAAAAAGAGAAATGAAAGCCATAGATAGAGACGGGAAACAAAGGAACTTCACTGTGGACCCGAATCTCCCTAGATGGGTATGCCAGAATTGTCGCCATGCTCTCTGTGTTGTAGGTGTGGAATCCTACACTGACAAGTTCTTCAATGACCCATCTCGCTCTGGATTGCAGGCTTCGTCAGTTCAAGGAAGCATGCTGGGGTCTACCCGGATGGACCATTCATTTGTGGTTCTTTCAAGACAAAAGGCTCAGGGTCATGGAATCCCTCCTCGGCCAAAAAGTGGACTTTTAGCTCAGTCCGAAGGCAATCCATCTGCAAAGGGAATGGAGGAATCATATGTTGTTTTACCGCCTGCTGCAGCTTCTATGTACAATAGTGGTTCTGCATCTGAGGCAGGCGAAGCTCATTTGCCAACTTCTGGTGTTAGTTCCAGCACTCCTCTACAGTCAAATAATCCTGGATTCTACTCGAGCATTACTATGTTGAAGAGAGCTTTTGATATCGCCACATCACAATCACAGGTTGAGCAGCCTCTCTGCTTGGAATGCATGCGGGTTTTATCTGATAAACTTGACCAAGAGGTTGAAGATGTGAACATGGATATAAAAGCGTATGAAGCATGCCTCCAGCGTTCTGAATTGGAATCTTATGACATACTTAATGATGCTGATTTTCTCAAGGAGAAATCAAAGATTGAGGAAGAAGAGAGACGACTACAAGCTGCAGTTGAAGATACTGAGAGGCAGTTTACTGAAGTAAAGGCTCAGAAGAAAGAATTAGAATCAAAATCAAAGCAGTTTCGAGAACTAGAGGAAAGGTATTGGCACGAGTACAATAACTTTCAGTTCCAGTTGGTCTCGCATCAGGAGGAGAGAGATGCAATTTTGACTAAAATTGAAGTTTCACAAGCACATTTGGAGTTGTTGAAGAGGACCAATGTGTTGACTGATGCCTTTCCTATCTGGCATGATGGAGAGTTTGGCACCATTAACAACTTCAGACTTGGCCGTCTTCCCAAGACACCGGTTGAGTGGGATGAAATCAATGCTGCATGGGGGCAGGCATGTTTACTACTTCACACAATGACTCAGTATTTTCGTCCAAAATTTCGATATGAAATCAAAATAATACCTATGGGAAGTTATCCTCGCATAGTTGACAGCAACAACAACACATACGAGCTATTTGGTCCTGTAAATTTGTTTTGGAGCACTCGATATGACAAGGCAATGACGCTGTTCTTATCATGTCTTAAAGAGTTTGCAGATTTTGCCAATGCAATGGATCATGAGAACAATGTTCCACCAGAAAAGTGCTTTAAACTTCCTTACAGGATTGAAAATGACAAAGTGGAAACTTACACCATAACACAGAGTTTCAACAAGCAGGAGAATTGGACGAAGGCTCTTAGATACATGCTTTGCAATCTAAAATGGGTCCTCTACTGGTTTGTTGGGAACACCAACTTCCAACCTTTATCCATGTCAACATCCCACCATTCTGAAGCTCCCTCAAAACAATCTTCTACCACCAGAAGCTAATCATTGAATCTCACTTATATGTAAAAAGAACAAGACACTGTATAATACAGTATTTGGATCAAATTACATAATAAAAACTCCTCTAAAATTCACACGAGTTTACAAATCTCAATTCCATTAGAGCTTTGCCCCTCCCCAAGCAGTGGCCATTACATAAAGAGACATGCAAACCAATATGTGTGAGCGAGGGCCAATAGATTCTAGTACCTACCAACACTAAATCATAGAAATGAAGCAATATGTTTGTACAATTGTTATTACAAAAACTAAAATTGCTAAATATAATATGAATCATATAGCAATATGGAACTGCTAAAATGAGAAAAAGTGAGTAAGTAAAATAAAACCTTAGGAATTTTTACCGGTGCACAAAAATCTTTATTATTTACCTATAAAATA

Network for GWHGAAEX000343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04111.11	APG6	174	481	4.40E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08334	BECN, VPS30, ATG6	Apelin signaling pathway	map04371
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - animal	map04137
		Apoptosis - multiple species	map04215

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.610
SRP064423	SRR2545915	Juvenile tuber	29.460
SRP108465	SRR5643513	five period of Gastrodia elata	17.760
	SRR5643514	five period of Gastrodia elata	20.580
	SRR5643515	five period of Gastrodia elata	20.150
	SRR5643524	five period of Gastrodia elata	19.590
	SRR5643525	five period of Gastrodia elata	35.000
	SRR5643528	five period of Gastrodia elata	50.660
	SRR5643658	five period of Gastrodia elata	50.540
	SRR5643659	five period of Gastrodia elata	17.490
	SRR5643660	five period of Gastrodia elata	20.310
	SRR5643661	five period of Gastrodia elata	18.580
	SRR5643662	five period of Gastrodia elata	20.060
	SRR5643663	five period of Gastrodia elata	22.160
	SRR5643664	five period of Gastrodia elata	25.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.190
SRP279888	Gastro	Gastrodia elata tuber	26.01
	Juven	Juvenile tuber	24.12
	Mother_Gastro	Mother tuber of Gastrodia elata	39.65
	Mother_Juven	Mother tuber of Juvenile	28.84