Detail information of GWHGAAEX000346/evm.TU.scaffold_1.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG20275.00E-74Spindle pole body protein
nrgi|743797188|ref|XP_010924918.1|6.04E-120PREDICTED: uncharacterized protein LOC105047619 [Elaeis guineensis]
trEMBLtr|M0RZU6|M0RZU6_MUSAM7.00E-103Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P14380_001}
TAIRAT2G197105.00E-74Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000008892360908355+
Transcript Sequence

Network for GWHGAAEX000346

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.13Ist1121761.30E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031Biological Processprotein transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.970
SRR2545915Juvenile tuber30.590
SRP108465SRR5643513five period of Gastrodia elata15.490
SRR5643514five period of Gastrodia elata13.900
SRR5643515five period of Gastrodia elata25.210
SRR5643524five period of Gastrodia elata15.110
SRR5643525five period of Gastrodia elata16.200
SRR5643528five period of Gastrodia elata20.380
SRR5643658five period of Gastrodia elata15.690
SRR5643659five period of Gastrodia elata22.890
SRR5643660five period of Gastrodia elata23.700
SRR5643661five period of Gastrodia elata20.940
SRR5643662five period of Gastrodia elata21.710
SRR5643663five period of Gastrodia elata21.310
SRR5643664five period of Gastrodia elata25.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.750
SRR6049655Rhizomagastrodiae_C368-T10_good_117.960
SRR6049656Rhizomagastrodiae_C368-T07_good_118.580
SRR6049657Rhizomagastrodiae_C368-T07_good_122.540
SRR6049658Rhizomagastrodiae_C368-T04_good_125.200
SRR6049659Rhizomagastrodiae_C368-T04_good_129.320
SRR6049660Rhizomagastrodiae_C368-T01_good_123.770
SRR6049661Rhizomagastrodiae_C368-T04_good_123.860
SRR6049662Rhizomagastrodiae_C368-T01_good_118.540
SRR6049663Rhizomagastrodiae_C368-T01_good_123.170
SRR6049664Rhizomagastrodiae_C368-T10_good_118.770
SRR6049665Rhizomagastrodiae_C368-T10_good_118.770
SRP279888GastroGastrodia elata tuber 26.52
JuvenJuvenile tuber20.02
Mother_GastroMother tuber of Gastrodia elata 38.23
Mother_JuvenMother tuber of Juvenile 44.31