Detail information of GWHGAAEX000347/evm.TU.scaffold_1.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428216723|ref|YP_007101188.1|3.00E-09homoaconitate hydratase family protein [Pseudanabaena sp. PCC 7367]
nrgi|224285372|gb|ACN40409.1|4.40E-11unknown [Picea sitchensis]
trEMBLtr|C0PRG9|C0PRG9_PICSI2.00E-11Putative uncharacterized protein {ECO:0000313|EMBL:ACN40409.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000008929643956381+
Transcript Sequence

Network for GWHGAAEX000347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01703leuC, IPMI-L Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.890
SRR2545915Juvenile tuber1.000
SRP108465SRR5643513five period of Gastrodia elata14.350
SRR5643514five period of Gastrodia elata17.300
SRR5643515five period of Gastrodia elata6.430
SRR5643524five period of Gastrodia elata11.680
SRR5643525five period of Gastrodia elata2.660
SRR5643528five period of Gastrodia elata2.270
SRR5643658five period of Gastrodia elata2.440
SRR5643659five period of Gastrodia elata1.050
SRR5643660five period of Gastrodia elata1.110
SRR5643661five period of Gastrodia elata2.340
SRR5643662five period of Gastrodia elata0.700
SRR5643663five period of Gastrodia elata1.320
SRR5643664five period of Gastrodia elata0.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.780
SRR6049655Rhizomagastrodiae_C368-T10_good_112.350
SRR6049656Rhizomagastrodiae_C368-T07_good_113.840
SRR6049657Rhizomagastrodiae_C368-T07_good_14.160
SRR6049658Rhizomagastrodiae_C368-T04_good_13.990
SRR6049659Rhizomagastrodiae_C368-T04_good_14.030
SRR6049660Rhizomagastrodiae_C368-T01_good_15.840
SRR6049661Rhizomagastrodiae_C368-T04_good_14.640
SRR6049662Rhizomagastrodiae_C368-T01_good_120.880
SRR6049663Rhizomagastrodiae_C368-T01_good_114.130
SRR6049664Rhizomagastrodiae_C368-T10_good_126.380
SRR6049665Rhizomagastrodiae_C368-T10_good_126.380
SRP279888GastroGastrodia elata tuber 0.47
JuvenJuvenile tuber7.61
Mother_GastroMother tuber of Gastrodia elata 3.84
Mother_JuvenMother tuber of Juvenile 2.26