Gene detail

Detail information of GWHGAAEX000350/evm.TU.scaffold_1.21

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|158339034\|ref\|YP_001520211.1\|	glycine dehydrogenase [Acaryochloris marina MBIC11017]
KOG	KOG2040	Glycine dehydrogenase (decarboxylating)
nr	gi\|720019647\|ref\|XP_010262151.1\|	PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Nelumbo nucifera]
Swissprot	tr\|O49954\|GCSP_SOLTU	Glycine dehydrogenase (decarboxylating), mitochondrial (Precursor)
trEMBL	tr\|M1CXP4\|M1CXP4_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400076966}
TAIR	AT4G33010	glycine decarboxylase P-protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	1205800	1210307	-

Transcript Sequence
>GWHTAAEX000350 ATGGAGCGCGCCCGCAGGCTCGCCGGCCGGAGCATCCTCGATCGTTTCATCGCCGGAGCGAGGCAATCCCCTTCCCGGACATTATCATCTTCCCATCAATCCTCTTCCTCAATCCTTTCATGTGTCCATGTTTTTCATCGTTGCACACGGACCCAACCCATTTCCATCGGCACCCTGCATCCTACCGATACCTTCCCTCGTCGGCACAACTCTGCCCCTCCCGACGACCAATCCTTCATGGCCGAATCCGTCGGCTACCCCTCCCTCGATGCCCTAATCGACGCCACCGTCCCCAGATCCATCCGCACACCCCCGATGATCCTTCCCAAGTTCGACGCCGGCCTCACCGAGAGCCAGATGATCGCTCACATGAAGCGCCTGGCGTCCATGAACCGCGTCTTCAGGTCCTTCATCGGCATGGGGTATTACGGCACCCATGTCCCTCCTGTCATCCTCCGCAACATCTTGGAGAACCCCGGCTGGTACACGCAGTACACCCCTTACCAAGCCGAGATCGCCCAAGGCCGCCTCGAATCCCTTCTCAACTTCCAGACCATGATCTCCGATCTCACGGCTCTCCCCTTGTCGAACGCCTCGCTTCTGGACGAGGGCACCGCGGCCGCCGAGGCCATGGCGATGTGCAACAACATCTTCCGAGGTAGGAAAAAGACGTTCCTCATCGCCTCCAACTGCCATCCCCAAACCATCGACGTTTGCCGCACCCGCGCCCTGGGATTCGGCCTCCAGGTCGAGATGTTCGATCTTCGATATGTTGATTTCCGATCGGGCGACGTGTGCGGCGTTCTTGTGCAGTATCCCGGCACCGAAGGGGAGGTGCTCGACTACACGAAGTTCATCGAGAATGCCCACGCGCACGGGGTGAAGGTCGTCATGGCCGCGGATTTGCTCGCCCTCTCCGTTCTCAGGCCCCCGGGTGAGCTCGGCGCAGACATCGTTATTGGTTCTGCTCAGAGATTTGGGGTCCCAATGGGGTATGGAGGCCCCCATGCCGCCTTTCTTGCCACCTCCCATGAATACAAGAGGATGATTCCTGGGAGGATTATTGGGATGAGCTTGGATTCCGCTGGAAAGCCGGCGCTCCGGATGGCGATGCAGACCCGAGAACAGCACATTCGCAGGGATAAGGCTACCAGCAACATCTGCACTGCGCAGGCGTTGCTCGCCAACATGGCTGCAATGTATGCGATTTACCATGGCCCCGAAGGGCTGAAGGCTATCGCAGAAAGGGTTCATGGCCTTGCTGCGGTTTTCGCCCACGGGCTTCGGAAGCACGGCTTAGCTGATGTTCAAGAACTTCCTTTCTTTGATACCGTGAAAATCAAGTGCGCCGATGCTAAAGCCGTTGCAGATGCTGCTTCTGAGAAGGAGATGAATCTGAGGGTTGTGAATTTTAACACCATAACGGTGTCCTTTGATGAGACTTCAACCCTTGATGATGTCAATAAGCTGTTTGAGGTTTTTGCTGGTGGAAACGCGGTAAATTTCACTGCTGAGTCTCTTGCTCCGGAGGTTCAGACAACAATCCCTCGGGGGCTTGCAAGAGAAAGCCCGTATCTGACGCATCCAATCTTCAATTCGTACCATACAGAGCATGAACTGCTCCGTTACTTGCATAGGCTCCAAGCAAGGGATCTTTCTCTATGCCACAGCATGATTCCACTCGGTTCCTGCACTATGAAGCTGAATGCAACGACAGAGATGATGCCTATAACCTGGCCTGAATTTGCAAATATTCATCCATTTGCCCCAACGGAACAGGCTCTGGGTTATCATGAAATGTTTAAAGATTTAAGCGAGCTCTTGTGTACAATCACAGCATTCGATTCCTTCTCTTTGCAACCGAACGCTGGTGCTGCTGGAGAATATACGGGGCTGATGGCTATCCGTGCCTACCATTTGTCAAGAGGAGAGGGTCATCGCAATGTGTGCATTATACCTGTTTCAGCTCACGGAACAAATCCTGCCAGCGCAGCAATGTGCGGTATGAAAATTGTTTCTGTTGGAACTGATTCCACAGGAAACATCAATATTGAGGAAGTAAGAATGACTGCCAATGCCCACAAGAATGACTTGGCTGCTTTGATGGTTACCTACCCTTCAACCCATGGTGTCTATGAAGAAGGAATTGATGAAATTTGCAAAATAATTCATGACAACGGAGGCCAAGTGTACATGGATGGTGCTAACATGAATGCTCAGGTAGGATTAACAAGTCCTGGTTCGATTGGAGCAGATGTTTGCCATCTAAATCTTCACAAAACGTTCTGCATTCCACACGGTGGAGGAGGGCCTGGCATGGGGCCCATCGGAGTGAAGAAACACTTGGCGCCATTCTTACCTTCCCACCCCGTTGTGCCGATCAGCGGGCTACCTATACCAGAGAAGCTGCAGCCATTAGGAACCGTTTCTGCTGCTCCATGGGGCTCCGCTCTTGTCCTCCCCATCTCCTACTCGTACATTGCCATGATGGGGTCAAAGGGGCTCACGGAGGCTTCGATGCTGGCTATTTTAAATGCAAATTACATGGCTAAGCGCCTCGAGAAGTATTACCCCATTCTCTTCCGTGGTGCGAACGGAACAGTTGCTCATGAGTTCATTGTGGATTTGAGAGGATTCAAGCAATCTGCTGGCATAGAGGCTGAAGATGTGGCCAAGAGGTTAATGGACTATGGATTTCACGGTCCGACAATGTCTTGGCCTGTTCCCGGAACCCTCATGATTGAACCCACTGAAAGCGAGAACAAAGCTGAGCTCGACAGGTTCTGCGATGCTCTTATATCCATCAGAGAAGAAATCGCTGAGATCGAGAGAGGCAATGCGGATATCAACAGCAATGTTCTGAAGGGCGCTCCTCATCCAGCATCGATGCTCATGAGTGACACGTGGACGAAGCCATACTCCAGGGAGTATGCCGCATTCCCCGCTGCTTGGCTCCGAGAAGCCAAGTTCTGGCCGGCCACAGGTCGTGTGGATAATGTGTACGGTGACCGCAACCTCATCTGCACGCTTCTTTCTGCCACTCAAATGGCCGAGGAGCAAACAGCCGCCGCCACCGCCTTCTAG

Network for GWHGAAEX000350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02347.15	GDC-P	68	494	4.60E-176
PF02347.15	GDC-P	510	787	9.80E-10

Protein Sequence

>GWHPAAEX000350
MERARRLAGRSILDRFIAGARQSPSRTLSSSHQSSSSILSCVHVFHRCTRTQPISIGTLHPTDTFPRRHNSAPPDDQSFMAESVGYPSLDALIDATVPRSIRTPPMILPKFDAGLTESQMIAHMKRLASMNRVFRSFIGMGYYGTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNFQTMISDLTALPLSNASLLDEGTAAAEAMAMCNNIFRGRKKTFLIASNCHPQTIDVCRTRALGFGLQVEMFDLRYVDFRSGDVCGVLVQYPGTEGEVLDYTKFIENAHAHGVKVVMAADLLALSVLRPPGELGADIVIGSAQRFGVPMGYGGPHAAFLATSHEYKRMIPGRIIGMSLDSAGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPEGLKAIAERVHGLAAVFAHGLRKHGLADVQELPFFDTVKIKCADAKAVADAASEKEMNLRVVNFNTITVSFDETSTLDDVNKLFEVFAGGNAVNFTAESLAPEVQTTIPRGLARESPYLTHPIFNSYHTEHELLRYLHRLQARDLSLCHSMIPLGSCTMKLNATTEMMPITWPEFANIHPFAPTEQALGYHEMFKDLSELLCTITAFDSFSLQPNAGAAGEYTGLMAIRAYHLSRGEGHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDSTGNINIEEVRMTANAHKNDLAALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGSIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPISGLPIPEKLQPLGTVSAAPWGSALVLPISYSYIAMMGSKGLTEASMLAILNANYMAKRLEKYYPILFRGANGTVAHEFIVDLRGFKQSAGIEAEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESENKAELDRFCDALISIREEIAEIERGNADINSNVLKGAPHPASMLMSDTWTKPYSREYAAFPAAWLREAKFWPATGRVDNVYGDRNLICTLLSATQMAEEQTAAATAF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00281	GLDC, gcvP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006544	Biological Process	glycine metabolic process
GO:0006546	Biological Process	glycine catabolic process
GO:0055114	Biological Process	oxidation-reduction process
GO:0003824	Molecular Function	catalytic activity
GO:0004375	Molecular Function	glycine dehydrogenase (decarboxylating) activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	453.640
SRP064423	SRR2545915	Juvenile tuber	280.200
SRP108465	SRR5643513	five period of Gastrodia elata	178.220
	SRR5643514	five period of Gastrodia elata	204.430
	SRR5643515	five period of Gastrodia elata	207.520
	SRR5643524	five period of Gastrodia elata	197.590
	SRR5643525	five period of Gastrodia elata	470.840
	SRR5643528	five period of Gastrodia elata	1087.440
	SRR5643658	five period of Gastrodia elata	740.290
	SRR5643659	five period of Gastrodia elata	233.620
	SRR5643660	five period of Gastrodia elata	272.050
	SRR5643661	five period of Gastrodia elata	334.040
	SRR5643662	five period of Gastrodia elata	344.450
	SRR5643663	five period of Gastrodia elata	341.150
	SRR5643664	five period of Gastrodia elata	347.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	119.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	116.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	120.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	281.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	434.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	564.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	246.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	427.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	129.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	101.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	73.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	73.970
SRP279888	Gastro	Gastrodia elata tuber	273.65
	Juven	Juvenile tuber	259.19
	Mother_Gastro	Mother tuber of Gastrodia elata	1,081.62
	Mother_Juven	Mother tuber of Juvenile	1,004.39