Detail information of GWHGAAEX000352/evm.TU.scaffold_1.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 4.00E-88 | Heat shock transcription factor |
| nr | gi|743769992|ref|XP_010915288.1| | 1.89E-99 | PREDICTED: heat shock factor protein HSF30-like [Elaeis guineensis] |
| Swissprot | tr|P41152|HSF30_SOLPE | 3.00E-91 | Heat shock factor protein HSF30 |
| trEMBL | tr|M5XZ21|M5XZ21_PRUPE | 3.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:EMJ24510.1} |
| TAIR | AT2G26150 | 4.00E-88 | heat shock transcription factor A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 1361732 | 1364512 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000352
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 12 | 101 | 1.60E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.570 |
| SRR2545915 | Juvenile tuber | 40.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.960 |
| SRR5643514 | five period of Gastrodia elata | 21.110 | |
| SRR5643515 | five period of Gastrodia elata | 30.620 | |
| SRR5643524 | five period of Gastrodia elata | 17.420 | |
| SRR5643525 | five period of Gastrodia elata | 12.020 | |
| SRR5643528 | five period of Gastrodia elata | 4.350 | |
| SRR5643658 | five period of Gastrodia elata | 8.620 | |
| SRR5643659 | five period of Gastrodia elata | 89.650 | |
| SRR5643660 | five period of Gastrodia elata | 107.690 | |
| SRR5643661 | five period of Gastrodia elata | 103.660 | |
| SRR5643662 | five period of Gastrodia elata | 78.860 | |
| SRR5643663 | five period of Gastrodia elata | 44.400 | |
| SRR5643664 | five period of Gastrodia elata | 109.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 116.28 |
| Juven | Juvenile tuber | 20.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.30 | |
| Mother_Juven | Mother tuber of Juvenile | 9.30 |