Detail information of GWHGAAEX000354/evm.TU.scaffold_1.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720097588|ref|XP_010247370.1|6.49E-87PREDICTED: uncharacterized protein LOC104590401 [Nelumbo nucifera]
Swissprottr|Q6JB11|MEG5_MAIZE9.00E-26Protein MATERNALLY EXPRESSED GENE 5
trEMBLtr|M0TFX7|M0TFX7_MUSAM5.00E-68Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P08890_001}
TAIRAT1G769402.00E-13RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000814874771518176+
Transcript Sequence

Network for GWHGAAEX000354

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11342053.40E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.570
SRR2545915Juvenile tuber29.570
SRP108465SRR5643513five period of Gastrodia elata24.080
SRR5643514five period of Gastrodia elata21.510
SRR5643515five period of Gastrodia elata22.780
SRR5643524five period of Gastrodia elata21.080
SRR5643525five period of Gastrodia elata21.670
SRR5643528five period of Gastrodia elata23.470
SRR5643658five period of Gastrodia elata20.550
SRR5643659five period of Gastrodia elata29.970
SRR5643660five period of Gastrodia elata29.290
SRR5643661five period of Gastrodia elata30.490
SRR5643662five period of Gastrodia elata28.900
SRR5643663five period of Gastrodia elata28.920
SRR5643664five period of Gastrodia elata30.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.250
SRR6049655Rhizomagastrodiae_C368-T10_good_120.660
SRR6049656Rhizomagastrodiae_C368-T07_good_122.850
SRR6049657Rhizomagastrodiae_C368-T07_good_120.030
SRR6049658Rhizomagastrodiae_C368-T04_good_120.880
SRR6049659Rhizomagastrodiae_C368-T04_good_123.720
SRR6049660Rhizomagastrodiae_C368-T01_good_124.040
SRR6049661Rhizomagastrodiae_C368-T04_good_121.990
SRR6049662Rhizomagastrodiae_C368-T01_good_124.490
SRR6049663Rhizomagastrodiae_C368-T01_good_126.760
SRR6049664Rhizomagastrodiae_C368-T10_good_127.790
SRR6049665Rhizomagastrodiae_C368-T10_good_127.790
SRP279888GastroGastrodia elata tuber 21.35
JuvenJuvenile tuber16.40
Mother_GastroMother tuber of Gastrodia elata 19.57
Mother_JuvenMother tuber of Juvenile 12.62