Gene detail

Detail information of GWHGAAEX000362/evm.TU.scaffold_1.34

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|20093139\|ref\|NP_619214.1\|	2.00E-106	GTP-binding protein [Methanosarcina acetivorans C2A]
KOG	KOG1486	0	GTP-binding protein DRG2 (ODN superfamily)
nr	gi\|586758710\|ref\|XP_006853841.1\|	0	hypothetical protein AMTR_s00036p00071330 [Amborella trichopoda]
Swissprot	tr\|Q9LQK0\|DRG1_ARATH	0	Developmentally-regulated G-protein 1
trEMBL	tr\|U5D4M0\|U5D4M0_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN15308.1}
TAIR	AT1G17470	0	developmentally regulated G-protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	2051231	2151059	-

Transcript Sequence
>GWHTAAEX000362 TACCACTCACCGACTCTATCTCGACGGCATCCACGAGAGCACGGCCACAAGGGTGGAGAGGGAGATAGGGAGAGTGGGAGCAAAATTGCAAGCAGGAGCGGCGGCTGTGGCATCTCTCTGGAATTCCACCTAACTGGCGAGGCTTGTAGACTTTCCCTTTCTCGAGCTCTTGCAGAACGACAGTTTTGCATGATATAGGGATTTAAGGCAAACTCTTTAGTACAAAAGCAAATGGGTATCATTGAGAGAATCAAGGAAATTGAAGCCGAAATGGCTCGGACGCAAAAAAACAAAGCTACAGAGTATCATCTTGGACAACTGAAGGCAAAGATAGCAAAACTAAGAACACAATTATTGGAACCTCCTAAGGGCTCAAGTGGAGGCGGAGAAGGTTTTGAAGTCACGAAATTTGGTCATGGTCGTGTGGCGCTGATAGGATTTCCAAGTGTTGGAAAATCTACTATTCTTACTCTTTTAACGGGCACACACTCGGAGGCTGCATCTTATGAGTTCACCACACTTACCTGCATCCCTGGAATTATCAACTACAATGATACGAAAATTCAGCTTCTTGATCTTCCTGGGATCATTGAAGGGGCATCAGAAGGCAAAGGAAGGGGTAGACAGGTTATTGCTGTATCAAAGTCATCAGACATTGTGTTGATGGTTCTTGATGCATCCAAAAGTGAGGGTCATCGCCAAATATTGACAAGTGAGTTGGAAGCTGTTGGCTTGAGGCTGAACAAGAGGCCACCTCAAATATATTTCAAAAAGAAAAAAACAGGAGGCATTTCATTCAACAGTACCTGTGCGTTGACTCATGTTGATGAAAAGCTTTGTTACCAGATTCTCCATGAGTACAAGATACACAATGCAGAGGTTCTTTTTCGTGAAGATGCTACCGTTGATGATCTTATTGATGTCATTGAGGGCAATCGAAAATACATGAAGTGCATTTATGTTTATAACAAGATTGATGTAATTGGCATAGATGATGTAGATAGGCTAGCTCGCCAGCCAAATTCAGTAGTAATCAGCTGTAATTTGAAGCTGAATCTAGACAGATTACTTGCAAGGATGTGGGAAGAGATGGGGCTTGTGAGAGTTTATACAAAACCACAAGGACAGCAGCCTGATTTCTCTGAACCTGTTGTTCTCTCTACTGATAGAGGGGGCTGCACAGTTGAAGATTTCTGTAATCATATTCACCGCAGCTTAGTGAAGGATGTGAAGTATGTTCTTGTCTGGGGAACAAGTTCAAGGCACTACCCTCAGCATTGTGGGCTATCACATGCCCTCCATGATGAGGATGTTGTTCAGATTGTAAAGAAAAAGGAGAAGGAAGAAGGGGGAAGGGGACGGTTTAAATCACATTCAACAACTCCTGCTCGCATTTCAGACAGAGAGAAGAAGGCTCCTCTGAAGACATGATAATGATGAAGATTTGATGCTTTGCCCTGAATGCTTTTCGTGATGAAGCAGCAGCAGCAGCTCAGTGTGAAGTATTTTAATGTGGCTTTGTTTATCTGAATGAGATTTGTTTCAAATGTCAGTTTTAATCTTGCTATGTGGCTACATTAAGACTTGATCAGGCGTCCTTAGAGCTTGTTTATAGGACTTAATAAGTTCTGCAAAGGTTTGCAATATGTTTGTGATATCCCTGTCATTCTTCCCCCAGCTAACCCAAATCTTTTCTTATTTGGAGTAACAATCATGAACATGGGGGTTTTACAAGTACAATGTGTGGATTGTAATTACATATAGCTCCATTTTTTGAAAATTTTCAAACGAGACTACAAATTAGAGGGA

Network for GWHGAAEX000362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	64	179	2.70E-20
PF16897.4	MMR_HSR1_Xtn	184	289	5.00E-45
PF02824.20	TGS	290	366	1.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.010
SRP064423	SRR2545915	Juvenile tuber	57.500
SRP108465	SRR5643513	five period of Gastrodia elata	44.620
	SRR5643514	five period of Gastrodia elata	46.610
	SRR5643515	five period of Gastrodia elata	40.780
	SRR5643524	five period of Gastrodia elata	45.680
	SRR5643525	five period of Gastrodia elata	68.150
	SRR5643528	five period of Gastrodia elata	50.660
	SRR5643658	five period of Gastrodia elata	67.590
	SRR5643659	five period of Gastrodia elata	30.450
	SRR5643660	five period of Gastrodia elata	29.000
	SRR5643661	five period of Gastrodia elata	27.550
	SRR5643662	five period of Gastrodia elata	31.940
	SRR5643663	five period of Gastrodia elata	29.700
	SRR5643664	five period of Gastrodia elata	29.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.700
SRP279888	Gastro	Gastrodia elata tuber	39.17
	Juven	Juvenile tuber	49.04
	Mother_Gastro	Mother tuber of Gastrodia elata	36.91
	Mother_Juven	Mother tuber of Juvenile	38.73