Detail information of GWHGAAEX000371/evm.TU.scaffold_1.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1666 | 6.00E-114 | V-SNARE |
| nr | gi|695039544|ref|XP_009407312.1| | 1.28E-135 | PREDICTED: vesicle transport v-SNARE 11-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LVP9|VTI13_ARATH | 2.00E-114 | Vesicle transport v-SNARE 13 |
| trEMBL | tr|M0TD18|M0TD18_MUSAM | 5.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P35750_001} |
| TAIR | AT3G29100 | 6.00E-114 | vesicle transport V-snare 13 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 2549218 | 2559412 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000371
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05008.14 | V-SNARE | 12 | 90 | 2.10E-24 |
| PF12352.7 | V-SNARE_C | 128 | 193 | 8.10E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08493 | VTI1 | SNARE interactions in vesicular transport | map04130 |
| Autophagy - yeast | map04138 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0005794 | Cellular Component | Golgi apparatus |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 329.010 |
| SRR2545915 | Juvenile tuber | 269.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 187.640 |
| SRR5643514 | five period of Gastrodia elata | 198.140 | |
| SRR5643515 | five period of Gastrodia elata | 196.480 | |
| SRR5643524 | five period of Gastrodia elata | 194.310 | |
| SRR5643525 | five period of Gastrodia elata | 409.250 | |
| SRR5643528 | five period of Gastrodia elata | 341.680 | |
| SRR5643658 | five period of Gastrodia elata | 391.870 | |
| SRR5643659 | five period of Gastrodia elata | 173.260 | |
| SRR5643660 | five period of Gastrodia elata | 190.700 | |
| SRR5643661 | five period of Gastrodia elata | 181.520 | |
| SRR5643662 | five period of Gastrodia elata | 208.300 | |
| SRR5643663 | five period of Gastrodia elata | 211.890 | |
| SRR5643664 | five period of Gastrodia elata | 214.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 203.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 194.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 188.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 234.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 211.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 231.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 203.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 178.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 127.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 143.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 173.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 173.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 247.72 |
| Juven | Juvenile tuber | 212.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 219.89 | |
| Mother_Juven | Mother tuber of Juvenile | 195.76 |