Detail information of GWHGAAEX000372/evm.TU.scaffold_1.49
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337744597|ref|YP_004638759.1| | 3.00E-11 | fibronectin type III [Paenibacillus mucilaginosus KNP414] |
| KOG | KOG4701 | 4.00E-115 | Chitinase |
| nr | gi|672157904|ref|XP_008798675.1| | 2.85E-138 | PREDICTED: acidic endochitinase-like [Phoenix dactylifera] |
| Swissprot | tr|P36908|CHIA_CICAR | 3.00E-126 | Acidic endochitinase (Precursor) |
| trEMBL | tr|Q19AL0|Q19AL0_PANGI | 2.00E-134 | Class III chitinase {ECO:0000313|EMBL:ABF82271.1} |
| TAIR | AT5G24090 | 4.00E-115 | chitinase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 2596818 | 2597840 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000372
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00704.27 | Glyco_hydro_18 | 28 | 287 | 4.50E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH18 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01183 | E3.2.1.14 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 4.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.400 |
| SRR5643514 | five period of Gastrodia elata | 15.140 | |
| SRR5643515 | five period of Gastrodia elata | 7.170 | |
| SRR5643524 | five period of Gastrodia elata | 12.420 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 77.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |