Gene detail

Detail information of GWHGAAEX000375/evm.TU.scaffold_1.54

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743755438\|ref\|XP_010910098.1\|	2.63E-129	PREDICTED: single myb histone 4-like [Elaeis guineensis]
Swissprot	tr\|Q6WLH4\|SMH3_MAIZE	1.00E-79	Single myb histone 3
trEMBL	tr\|M0SM84\|M0SM84_MUSAM	7.00E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P08670_001}
TAIR	AT1G72740	3.00E-61	Homeodomain-like/winged-helix DNA-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	2780408	2809485	+

Transcript Sequence
>GWHTAAEX000375 TTTTGTTTTCTTTATAAATCATATAGACTTATCACTAGCGAGGGCAGGGGTACGATCAACTGTAAACCGGGGATAGGGTTAAAACCCTTGAGCTGCAGAAGGATGGATGTAGTGTCGGAGAAACAACAACGTGAAAGGCAGATATAGAAGGGCGAGAGAAGAAGTTAAAGTATGGGAGTTCCGAAGCAGAAATGGACCACGGAGGAGGAGGAGGCCCTACGCGCTGGCGTCGATAAGCACGGCGCCGGTAAGTGGCGGACTATACAGAAGGACCCAGAGTTCAGCCATTGCCTCGCTACTCGATCCAATATTGATCTCAAGGATAAATGGAGAAATATGATTGTTAGTGCTAATGGACAAGGCATTAGGGAGAAGTCAAGGACACCAAAGCTGAAAAGTCAATCGACTACACAGTGTAGCTCCCAGAGTCCACCCGTTCAGGCACCTGCAAGTGTAGAGAAGCAACCTACAGTAGAATCCACGATGACACCTCAAGATGCAAAAATTCCTGCACGGTACAATGCAATAATAATGGAGGCTCTTACAGTGTTGCAAGAACCAAATGGCTCTGATATTGGCGCGCTTTACAAATACATTGAGCAAAGAATGGAAATTCCATCAGGTTTTAGAAGATTACTTGGTTCAAAACTGAGGAGGCTCGTTGCTCAAAATAAAATAGAGAAGGGTTCGAGGGGATATCAACTCAAAGATCCTTCCTTTGGAATTAAGACTCCAATGCCAAAGCAAAAGGATCCAGCAAACAGGCTGAAACCGCTGCAGTCGTCAGATTTCAACAGTAAAGCCATAGATCCCATTGAGGAAGCTGCGGCGAGTGCTGCATACAAAATAGCTGATGCAGAGGCCAAAGCATATCTGGCTTCCGAAGCAGTCAGAGAGGCTGAAAAGATTTCCAAGATGGCAGAGGAGACTGAATCAATGCTAATGCTAGCAAAGGAGGTTTATGAAAACTGTGTGCATGGTGAGATTGTAACAATGGCGTAGGCTGCTTGTCCCCAAAGGTGCGCCTGTTTGTTGTAACTGTAGATGATGATAATTCTTCATCAATTTTAAGAGTTGGAATGTTACCAACGGCCAAGTAATGGTTGCAAAAGGGTATATATATATATATACAAACACACGCACATACACAAGAGTATGATGGAGATTTGTTGTTCCAAAGGTTTATAAATAATTTTTGCAGTATGGGTTTTTGGTTCAGTGCTTTTGGGTAGTAATGCTGCTCTAGTTTGTGAAACTATAGCTAAAGCTTAATTTAGCTCATTGAATGACAAATATAATCAACAATTTTTATGCATTAATAAGGTATAATGCTTAGGTACAATTTTCTATTTGACCAATAGCTCGCTCATAATACTTTGTAATTAATATTGTTTACTAATAATTTTAATTATGGTATGTATAAGTGAGTTGTAATCATTGAAACTATTGTAAGAATGTAAATCAAATGCTATTAAAAAGTTGTTGGAGG

Network for GWHGAAEX000375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	5	56	4.60E-09
PF00538.18	Linker_histone	115	171	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	Biological Process	nucleosome assembly
GO:0003677	Molecular Function	DNA binding
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.490
SRP064423	SRR2545915	Juvenile tuber	33.580
SRP108465	SRR5643513	five period of Gastrodia elata	29.080
	SRR5643514	five period of Gastrodia elata	24.740
	SRR5643515	five period of Gastrodia elata	23.810
	SRR5643524	five period of Gastrodia elata	22.320
	SRR5643525	five period of Gastrodia elata	42.230
	SRR5643528	five period of Gastrodia elata	35.150
	SRR5643658	five period of Gastrodia elata	26.510
	SRR5643659	five period of Gastrodia elata	32.820
	SRR5643660	five period of Gastrodia elata	35.300
	SRR5643661	five period of Gastrodia elata	36.040
	SRR5643662	five period of Gastrodia elata	38.180
	SRR5643663	five period of Gastrodia elata	34.890
	SRR5643664	five period of Gastrodia elata	39.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.420
SRP279888	Gastro	Gastrodia elata tuber	36.68
	Juven	Juvenile tuber	26.62
	Mother_Gastro	Mother tuber of Gastrodia elata	23.52
	Mother_Juven	Mother tuber of Juvenile	19.76