Detail information of GWHGAAEX000378/evm.TU.scaffold_1.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|34498390|ref|NP_902605.1| | 4.00E-06 | chitinase [Chromobacterium violaceum ATCC 12472] |
| KOG | KOG4701 | 9.00E-113 | Chitinase |
| nr | gi|743796702|ref|XP_010924796.1| | 2.25E-133 | PREDICTED: acidic endochitinase-like [Elaeis guineensis] |
| Swissprot | tr|P36908|CHIA_CICAR | 2.00E-120 | Acidic endochitinase (Precursor) |
| trEMBL | tr|B9I8R4|B9I8R4_POPTR | 2.00E-124 | Chitinase family protein {ECO:0000313|EMBL:EEE98479.2} |
| TAIR | AT5G24090 | 9.00E-113 | chitinase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 3126516 | 3127894 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000378
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00704.27 | Glyco_hydro_18 | 27 | 286 | 6.60E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01183 | E3.2.1.14 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.830 |
| SRR2545915 | Juvenile tuber | 4.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 76.760 |
| SRR5643514 | five period of Gastrodia elata | 29.100 | |
| SRR5643515 | five period of Gastrodia elata | 196.880 | |
| SRR5643524 | five period of Gastrodia elata | 99.160 | |
| SRR5643525 | five period of Gastrodia elata | 25.700 | |
| SRR5643528 | five period of Gastrodia elata | 107.450 | |
| SRR5643658 | five period of Gastrodia elata | 62.910 | |
| SRR5643659 | five period of Gastrodia elata | 8.610 | |
| SRR5643660 | five period of Gastrodia elata | 3.560 | |
| SRR5643661 | five period of Gastrodia elata | 4.670 | |
| SRR5643662 | five period of Gastrodia elata | 17.740 | |
| SRR5643663 | five period of Gastrodia elata | 8.830 | |
| SRR5643664 | five period of Gastrodia elata | 16.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 99.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.90 |
| Juven | Juvenile tuber | 1.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 241.83 | |
| Mother_Juven | Mother tuber of Juvenile | 86.42 |