Gene detail

Detail information of GWHGAAEX000380/evm.TU.scaffold_1.68

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743755992\|ref\|XP_010914410.1\|	0	PREDICTED: F-box/kelch-repeat protein At3g61590-like [Elaeis guineensis]
Swissprot	tr\|Q9M310\|FBK77_ARATH	1.00E-171	F-box/kelch-repeat protein At3g61590
trEMBL	tr\|M0TXP2\|M0TXP2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P05330_001}
TAIR	AT3G61590	4.00E-171	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	3357903	3359825	+

Transcript Sequence
>GWHTAAEX000380 TTGTTGCTGTTTTATCCCATTGAGGTATTGCGTTGTGAAATTTCATTTCTCTGGTTTTGTTTCTCTCGATTTCTTCCTCGCCTGCCTTTCTGTGAAATATTGAATGGGTTTTTTTATGCAGATCTGCTCTTTTGTTCCTTTCTTTGTTTAATCTCGTTGGTCTCTCGTGTCGTAGCTTTTCCATTTCTGCGTTCTTTGTAAAATTGAATTCTCTTTTTCATTTTGAATAATTTTGTTCTTAATTAGGACTGATTGGGCAGACAGCGTGATGCATAGATAGATGCGCATCGCATGCAGTCGAAAGTACCCTTTTGATTTTTGTCTAATAAAGTTTGTCTAGGGTTTTGTTTTGCTGGGGCAATAGGATAAAGCGCGATTAGATGAAGACTTTTTTTAATTTTGTTTGTTTTATTTCACTGATAATTGGAATGCCTTGTTATATATAATTTTGGCTCTTCTATGACCAGCACATGTTAAAATAATGATTGTATCTTTTTAGTCATTTCTTCATTTTTCTTGACAACACTGCGTACTATTGTTCCCATGAATTTATGATGTAGAGAGTTTGTTTCGCATACACCTATTCTTAGTTTGGTCTTACAATTATGGAGGGTGAAACTTCATGGGATTCATACAGTATGATCCACTTTGGGGCTAGTGTTCATCGCTTTGAGCAAATATCTGGGGGCAACGAGGAAGAAGAATTCCATACAGTTTCCTTAGAGAACATTCTTCCCACTGATGTTTTGGAGAGAATTCTCTCCTTTTTGCCAATTGCAAGCATATTTAAGGCCGCCTGTGTGTGCAAAAGATGGTATGAAGTTATATATTCAAGAAGGACCATATGGGCAACTCGGGTGCAGCAGAAGCCATGGTACTTCATGTTCACCTGCAATGATACGGCTGCAGGATACGCATATGATCCAGATCTCCGGAAATGGTATAATCTTGAGCTCCCCTGCATCGAGAAAAGTAACTGGTTTATATCTTCTTCGTCCGGGCTAGTTTGCTTCATGGACAATAATACCAGGAGCCGTCTATTTGTCTGCAACCCAATTACAAGGGATTGGAGAAGCCTCCTTGAGCCTCCGGGTGTGAAATCCCCTGATTATAGCGCCCTTTCTATTTCATTTAACAACAAGTCCAAATGCTACGACATTGTTTTGGTGAAAACAAAGCAAGTGCCTGATGATTTTCTTCAATGGGAGCTTTCAATCCATATCTATGAGTCTGAAAGCGAACTATGGGTCACTACAGCTACGGAGGTCTTGATGGGTTGGAGGGGTGGGGATGAGAGTGTGATATGCAATGGTGTACTGTATTGCTTGATTCATTGCACCGGAGCTGTGGGGAATCCCTTGGTTCGTCAAGGGCTCCTTATGTATGATATATCTACGCGATCATCAAGCACTTTGATGAGCACGTCAATACCTGTGCCTTGCTTGCTTACTTGTGGTAAGCTGATGAACCTCAATGATCGGCTTGTGCTGGTCGGCGGGATTGCTAAGCTTGATAGGCCTGATATCATTAAGGGCATAGGCATTTGGGAGCTTCATGGAAAAGATTGGCTGGATGTTGCGCGGATGCCTCATAGGTACTTTCAAGGCTTTGGGGAGTTGGATGATGTCTTTGCGAGTAGTGGTTCAGACAGCCTCATATATATCCAAAGCTATGGTGCCACAGCTCTGCTGGCTTTCGACATGAGCACGAGGCAGTGGAGATGGTCACAGAAGTGCCCTGTGATGAAGAGATTTCCACTTCAGCTGTTCACCGGCTTTTGCTTCGTGCCCAGACTCGAAGTTTCCGCCTGA

Network for GWHGAAEX000380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	43	85	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.930
SRP064423	SRR2545915	Juvenile tuber	15.670
SRP108465	SRR5643513	five period of Gastrodia elata	39.760
	SRR5643514	five period of Gastrodia elata	24.870
	SRR5643515	five period of Gastrodia elata	28.310
	SRR5643524	five period of Gastrodia elata	23.640
	SRR5643525	five period of Gastrodia elata	9.660
	SRR5643528	five period of Gastrodia elata	6.710
	SRR5643658	five period of Gastrodia elata	12.120
	SRR5643659	five period of Gastrodia elata	12.740
	SRR5643660	five period of Gastrodia elata	15.430
	SRR5643661	five period of Gastrodia elata	11.640
	SRR5643662	five period of Gastrodia elata	19.200
	SRR5643663	five period of Gastrodia elata	12.170
	SRR5643664	five period of Gastrodia elata	25.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	94.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	71.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	145.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	117.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	143.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	109.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	113.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.470
SRP279888	Gastro	Gastrodia elata tuber	15.18
	Juven	Juvenile tuber	91.80
	Mother_Gastro	Mother tuber of Gastrodia elata	13.15
	Mother_Juven	Mother tuber of Juvenile	24.25