Detail information of GWHGAAEX000382/evm.TU.scaffold_1.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339484857|ref|YP_004696643.1| | 3.00E-17 | serine/threonine protein kinase [Nitrosomonas sp. Is79A3] |
| nr | gi|695067248|ref|XP_009380537.1| | 0 | PREDICTED: probable inactive receptor kinase At4g23740 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SUQ3|Y4374_ARATH | 5.00E-179 | Probable inactive receptor kinase At4g23740 (Precursor) |
| trEMBL | tr|A0A068U967|A0A068U967_COFCA | 0 | Coffea canephora |
| TAIR | AT4G23740 | 2.00E-178 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 3437089 | 3439304 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000382
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 62 | 4.50E-08 |
| PF00560.32 | LRR_1 | 162 | 181 | 0.13 |
| PF07714.16 | Pkinase_Tyr | 293 | 555 | 1.10E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.580 |
| SRR2545915 | Juvenile tuber | 5.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.780 |
| SRR5643514 | five period of Gastrodia elata | 7.780 | |
| SRR5643515 | five period of Gastrodia elata | 7.580 | |
| SRR5643524 | five period of Gastrodia elata | 5.270 | |
| SRR5643525 | five period of Gastrodia elata | 1.570 | |
| SRR5643528 | five period of Gastrodia elata | 2.320 | |
| SRR5643658 | five period of Gastrodia elata | 1.440 | |
| SRR5643659 | five period of Gastrodia elata | 1.580 | |
| SRR5643660 | five period of Gastrodia elata | 0.970 | |
| SRR5643661 | five period of Gastrodia elata | 0.990 | |
| SRR5643662 | five period of Gastrodia elata | 1.550 | |
| SRR5643663 | five period of Gastrodia elata | 0.890 | |
| SRR5643664 | five period of Gastrodia elata | 2.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.64 |
| Juven | Juvenile tuber | 0.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.58 | |
| Mother_Juven | Mother tuber of Juvenile | 4.29 |