Detail information of GWHGAAEX000388/evm.TU.scaffold_1.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427719531|ref|YP_007067525.1|3.00E-07WD40 repeat-containing protein [Calothrix sp. PCC 7507]
KOGKOG24452.00E-120Nuclear pore complex component (sc Seh1)
nrgi|743755901|ref|XP_010913965.1|7.64E-169PREDICTED: protein SEH1 [Elaeis guineensis]
Swissprottr|Q93VR9|SEH1_ARATH7.00E-128Protein SEH1 {ECO:0000303|PubMed:21189294}
trEMBLtr|M0S5M3|M0S5M3_MUSAM2.00E-152Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06320_001}
TAIRAT1G643502.00E-120Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000837954203819738-
Transcript Sequence

Network for GWHGAAEX000388

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402773080.0001
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14299SEH1 RNA transport map03013
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.370
SRR2545915Juvenile tuber27.940
SRP108465SRR5643513five period of Gastrodia elata31.840
SRR5643514five period of Gastrodia elata34.800
SRR5643515five period of Gastrodia elata30.940
SRR5643524five period of Gastrodia elata32.300
SRR5643525five period of Gastrodia elata35.040
SRR5643528five period of Gastrodia elata31.090
SRR5643658five period of Gastrodia elata30.860
SRR5643659five period of Gastrodia elata24.390
SRR5643660five period of Gastrodia elata33.060
SRR5643661five period of Gastrodia elata29.310
SRR5643662five period of Gastrodia elata28.030
SRR5643663five period of Gastrodia elata28.520
SRR5643664five period of Gastrodia elata28.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.490
SRR6049655Rhizomagastrodiae_C368-T10_good_131.790
SRR6049656Rhizomagastrodiae_C368-T07_good_137.920
SRR6049657Rhizomagastrodiae_C368-T07_good_142.130
SRR6049658Rhizomagastrodiae_C368-T04_good_147.790
SRR6049659Rhizomagastrodiae_C368-T04_good_152.170
SRR6049660Rhizomagastrodiae_C368-T01_good_139.800
SRR6049661Rhizomagastrodiae_C368-T04_good_145.130
SRR6049662Rhizomagastrodiae_C368-T01_good_139.040
SRR6049663Rhizomagastrodiae_C368-T01_good_139.200
SRR6049664Rhizomagastrodiae_C368-T10_good_134.860
SRR6049665Rhizomagastrodiae_C368-T10_good_134.860
SRP279888GastroGastrodia elata tuber 39.35
JuvenJuvenile tuber57.76
Mother_GastroMother tuber of Gastrodia elata 34.16
Mother_JuvenMother tuber of Juvenile 36.94