Detail information of GWHGAAEX000389/evm.TU.scaffold_1.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-120 | FOG: PPR repeat |
| nr | gi|743798254|ref|XP_010925180.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Elaeis guineensis] |
| Swissprot | tr|Q9SIT7|PP151_ARATH | 6.00E-121 | Pentatricopeptide repeat-containing protein At2g13600 |
| trEMBL | tr|A5C8U5|A5C8U5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN59994.1} (Fragment) |
| TAIR | AT2G13600 | 2.00E-120 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 3876640 | 3878951 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000389
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 20 | 42 | 0.83 |
| PF01535.19 | PPR | 45 | 75 | 0.027 |
| PF01535.19 | PPR | 148 | 175 | 5.60E-05 |
| PF01535.19 | PPR | 313 | 337 | 0.0059 |
| PF01535.19 | PPR | 344 | 372 | 0.042 |
| PF13041.5 | PPR_2 | 374 | 421 | 6.00E-11 |
| PF13041.5 | PPR_2 | 474 | 521 | 5.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.980 |
| SRR2545915 | Juvenile tuber | 0.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.140 |
| SRR5643514 | five period of Gastrodia elata | 0.970 | |
| SRR5643515 | five period of Gastrodia elata | 0.590 | |
| SRR5643524 | five period of Gastrodia elata | 1.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.300 | |
| SRR5643658 | five period of Gastrodia elata | 0.180 | |
| SRR5643659 | five period of Gastrodia elata | 1.290 | |
| SRR5643660 | five period of Gastrodia elata | 1.790 | |
| SRR5643661 | five period of Gastrodia elata | 1.760 | |
| SRR5643662 | five period of Gastrodia elata | 2.020 | |
| SRR5643663 | five period of Gastrodia elata | 2.030 | |
| SRR5643664 | five period of Gastrodia elata | 2.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.22 |
| Juven | Juvenile tuber | 0.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.50 | |
| Mother_Juven | Mother tuber of Juvenile | 0.44 |