Detail information of GWHGAAEX000391/evm.TU.scaffold_1.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332685997|ref|YP_004455771.1|1.00E-58polygalacturonase [Melissococcus plutonius ATCC 35311]
nrgi|700257589|gb|AIU50401.1|0pectin lyase-like superfamily protein, partial [Lilium brownii]
Swissprottr|A7PZL3|PGLR_VITVI2.00E-143Probable polygalacturonase
trEMBLtr|A0A097PQU5|A0A097PQU5_9LILI0Pectin lyase-like superfamily protein {ECO:0000313|EMBL:AIU50401.1} (Fragment)
TAIRAT4G238200Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000839010123908225-
Transcript Sequence

Network for GWHGAAEX000391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.16Glyco_hydro_281454099.90E-40
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28
Carbohydrate-Active enzymes FamilyGH28

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.160
SRR2545915Juvenile tuber77.040
SRP108465SRR5643513five period of Gastrodia elata65.540
SRR5643514five period of Gastrodia elata54.100
SRR5643515five period of Gastrodia elata69.460
SRR5643524five period of Gastrodia elata47.550
SRR5643525five period of Gastrodia elata39.230
SRR5643528five period of Gastrodia elata29.510
SRR5643658five period of Gastrodia elata29.920
SRR5643659five period of Gastrodia elata50.080
SRR5643660five period of Gastrodia elata56.500
SRR5643661five period of Gastrodia elata65.710
SRR5643662five period of Gastrodia elata18.360
SRR5643663five period of Gastrodia elata25.110
SRR5643664five period of Gastrodia elata22.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_194.860
SRR6049655Rhizomagastrodiae_C368-T10_good_129.780
SRR6049656Rhizomagastrodiae_C368-T07_good_188.140
SRR6049657Rhizomagastrodiae_C368-T07_good_181.050
SRR6049658Rhizomagastrodiae_C368-T04_good_164.600
SRR6049659Rhizomagastrodiae_C368-T04_good_142.510
SRR6049660Rhizomagastrodiae_C368-T01_good_167.640
SRR6049661Rhizomagastrodiae_C368-T04_good_176.050
SRR6049662Rhizomagastrodiae_C368-T01_good_184.100
SRR6049663Rhizomagastrodiae_C368-T01_good_166.890
SRR6049664Rhizomagastrodiae_C368-T10_good_162.830
SRR6049665Rhizomagastrodiae_C368-T10_good_162.830
SRP279888GastroGastrodia elata tuber 13.77
JuvenJuvenile tuber41.93
Mother_GastroMother tuber of Gastrodia elata 19.86
Mother_JuvenMother tuber of Juvenile 6.83