Detail information of GWHGAAEX000396/evm.TU.scaffold_1.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743796942|ref|XP_010924856.1|1.22E-50PREDICTED: ethylene-responsive transcription factor ERF061-like [Elaeis guineensis]
Swissprottr|Q8H1E4|RAP24_ARATH5.00E-36Ethylene-responsive transcription factor RAP2-4
trEMBLtr|M0S3Q6|M0S3Q6_MUSAM4.00E-46Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P27990_001}
TAIRAT1G780802.00E-35related to AP2 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000839973363998037-
Transcript Sequence

Network for GWHGAAEX000396

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.19AP2871353.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.840
SRR2545915Juvenile tuber6.180
SRP108465SRR5643513five period of Gastrodia elata32.860
SRR5643514five period of Gastrodia elata27.710
SRR5643515five period of Gastrodia elata51.510
SRR5643524five period of Gastrodia elata40.470
SRR5643525five period of Gastrodia elata484.880
SRR5643528five period of Gastrodia elata263.610
SRR5643658five period of Gastrodia elata204.560
SRR5643659five period of Gastrodia elata6.520
SRR5643660five period of Gastrodia elata10.400
SRR5643661five period of Gastrodia elata13.050
SRR5643662five period of Gastrodia elata16.650
SRR5643663five period of Gastrodia elata9.140
SRR5643664five period of Gastrodia elata17.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.980
SRR6049655Rhizomagastrodiae_C368-T10_good_129.630
SRR6049656Rhizomagastrodiae_C368-T07_good_120.490
SRR6049657Rhizomagastrodiae_C368-T07_good_123.270
SRR6049658Rhizomagastrodiae_C368-T04_good_119.020
SRR6049659Rhizomagastrodiae_C368-T04_good_115.750
SRR6049660Rhizomagastrodiae_C368-T01_good_111.730
SRR6049661Rhizomagastrodiae_C368-T04_good_119.060
SRR6049662Rhizomagastrodiae_C368-T01_good_18.060
SRR6049663Rhizomagastrodiae_C368-T01_good_14.490
SRR6049664Rhizomagastrodiae_C368-T10_good_114.860
SRR6049665Rhizomagastrodiae_C368-T10_good_114.860
SRP279888GastroGastrodia elata tuber 41.66
JuvenJuvenile tuber3.77
Mother_GastroMother tuber of Gastrodia elata 36.72
Mother_JuvenMother tuber of Juvenile 5.34