Gene detail

Detail information of GWHGAAEX000399/evm.TU.scaffold_1.92

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262340986\|ref\|YP_003283841.1\|	4.00E-10	RNA-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge]
KOG	KOG0117	4.00E-138	Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nr	gi\|672112885\|ref\|XP_008808113.1\|	0	PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q05196\|PABP5_ARATH	4.00E-15	Polyadenylate-binding protein 5
trEMBL	tr\|M0S682\|M0S682_MUSAM	1.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P08410_001}
TAIR	AT3G52660	4.00E-138	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	4101486	4110728	-

Transcript Sequence
>GWHTAAEX000399 CAAGAATTATAGGAAATAAATTATAATTATAATTAAATCATTATTAGTTGTTTTTGGATCAACAGTCAAAGTGTTATGGTGAATTTATCTTTTGATATTAAAAGCATAAGATGCAAATAATTTACTTTATATTTAATACTGCAAGTACTTGTTTAAAATCTTTTCTTGCAAGTACTTGTATAAGGATATTTTCTTCCAAGTGCACTCTGTTTCAAGAATGTGACTTTTCTTCACCATTCAACTGTCTTCACAACAGGCGGCCACTTCAAGTATTTATTTTCATCCAATATATATATAGATTGAATGCTTTGCAGTTCTCCTATTGAATAAATGATGCTCCCAGCTGATTGGATCTCATTTATTAAGTTTGGTTATACTGGAGATCTTGTAGAGTATAGACATACTTTAAGAGGGCAACCATTTGAATTGTTGTTGCATTGCAGCTCAGAGTAGGGAGACAGAATTGCAGAAACCTAGGAGGGTAGTGGCTTAAGCATCAACACCATTTTTTAGGTAAGAATAATGCTTTCTTAGATAGTTGGAAGTTTGCACCGGTAGATTTTTGTTACAAGGTTAGAGGAATAGTACAGGGATCAGTTTTTCCTTAGAGATCTAGCAGTGGCATTGATATCATGTGGAAACATAAAACTTTTCATTTTCATAATCTTACTAGAGTTGAGTATGCATATTTATGTTTACATTGAGAAACCTAAACTAAGTAACAAATATTGAATAGTGTGCTGCATACGGTTTTTATAAACTAAGAAAATCATGTGCTTGTTAATTATAGTTGAGTGATTTTCTTCAATATTACACTATAGGTTGAATCTTTTGATATTGCAGCAAATAATATCCCCTGAATAATACCATATGGTTTGTTTAGGAACTGTCCGTGAGATTTAATGATTATTTGGGACGGCTACTACACTTGGAAAACTATGAATTTGCTTAAAAATTTATTAAAATTGTTGCAGCTAACTTTAAGTTCTTTAAAAACCCAATTTTTGAACTGCAATACATAAAACACAAACATGATAATATTTACATTCAAAACAATTGTCATCATATTGAGAAAGATGTCCTTAATATTAAAATTTTAATACATAATTTTTAAAATTTATGGTTTTTAATAAGCAATGGTAAAGTTGGCCTCCAAATAATCTCTGGAAAATTTCTACAGCTGTTCTAGTTTTAAAACAGCAATAAATCTGCCGCAATAACCCTAAAGGTCATTGTGGAACTATGACTATTTTGGGCAACTGCATCTGTGCATTGATGCTGCTTTAGGTTAATATGCTGTAAAGAAAGTTTCTGTTGCTATTATTGTTCTTTAAATGCTCTGTCGTCATATTGTTATGCACATTGTAAATGTTAGGTGGTGGGAGCCAACAGATGCTTAGCTGACGACTGGGCAATCTATTAGTATACATTAGTTGTGGTGGGCCAGGGGGAAAATCCTAATTTTATATGCTAATTAATAGAAAACCTCTTGGCTACACATTGGAAATTGTTTATTGAAATTGATTTTTGAGGGTCTACTTTCTAAAGAAACAAATATATCTTCCCAAAAGATAGAGAACGATTAGATATAAAAAGAACATTAGCTAGAAAGTTCCCCAAACGTTCTCCATATATTGTGACAGGACTGATGCTCTTTTAACTTGTTACATTATATTTTTGTATTGATACTGGATTCTTACCTTTAAAAACCTTTATGACTTGAGCCTTTGTAAAAAAACATTAAAAATGACTTGACTCTTAGTATTCTCTTGCCCGTGATTTAAATTGCTGCTGGTAGGTTAACTTACATGCCTTTTTTATTGTTATGATGATGAACGCTCGATTGTCTTTTTTCATTATAATTTGAAGGGCATATTTTATCAAATTTTAATACATCGTTTAGTAAATGTGTCAATGTATCCTAGTTGTATGTATATTTTATTTAATTATTAAAACTTTTCCATCTTATTGTTATGCTTCTCACATTGTTTCTTTTCCCCTTTCTTTTGTTTCTCTCTCTTTTGAAATCATTGCGTTCGATTTGGATAACTTATTCAGTTAAACAAAAGCATGGTTTTTCAGGCTTCACCTTGCTTTCTAAATTAGCAGAAATTTGTTTTCATCTTTTTGTCCATGTTCGGCATCAGCCTTATTGTTATCATGATTAGATCTTTATCTTACCTGTTCTATTTTTACTATTATTGTTTTCATCCAATACAAAAGATCTGCCATAATGAGGCTCCGATGGGGCTTTCCATCACTTGGATGAGATACGATTCAACTTCGAAATTCCTGTCATCCTCGTTTATTTTCCTTCCAACAAATTTGTATGCATCCTTCGCAATTTCTTTTGGCTTCTCTTCTCCACAGTTGCTTTTCAAGATTCCCTTAGATACACAAAATGCCAAGAGCAAGAGCAAGAGCTGCTGTTGCTGATGCTGCTAAGGTAGCTGAACCGATAATGCCTGCTGAACTTGAAGAGAAGGTGGAGCTTGATGGGTTTGAAGAAATGGAAGAAGAGGTTGAATATGAAGAAGTTGAGGAAGAAGAAGAGTTGGAGGAAGAAGAAGAAGTGTTAGAGGAGATAGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGCTGAAAAGGAGAGTGACAATATTATTGTTACTGGTACAGGTTTGAAAGATGATGCTACTTTGTCCAGTAATGATCCTATGAATGAGGGTAGTGAAGGTCTAGATGATGAAGGCAAAAAGCATACTGAGTTACTTGAGCTTCCACCGCATGGATCTGAGGTGTATGTTGGAGGCATCCCGCCTGATGCAACTGAAGAAGAGTTGAGAATCTTTTGTGAATCATCAGGGGAAGTTACTGAGGTTAGAATGATGAAAGGAAAGGAATCTTCAGAGAATAAAGGTTATGCGTTTGTTACTTTCAGGACAAGGGAGTTAGCTGCATCTGCTATTGAAAAGCTGAACAATACTGAATTCAAGGGAAAAAAGATCAAATGCTCTTCATCTCAAGCTAAGAATAGGTTGTTTCTTGGTAATGTTCCCCGAAAGTGGACTGAGGATGATCTAAAGAAGGCAGTGTTGGAGATTGGCCCTGGTGTTACTAGTGTGGACTTGATGAAGGCAAGATCTTCCTTATTTCAAAATTATCAAAAGGATCGCAACAGAGGATTTGCTTTTATCGAGTTCTACAATCATGCTTGTGCTGCTTATGCAAAGCAAAAAATGTCAGATCCAAAGTTCAAGCTGGATTCTAATGGTCCCACAATTAGCTGGGCTGATCCTAAAACTGGGGATTCCTCTTCTCAGATAAAGTCGGTTTACGTAAAGAATTTACCAAAAGATATAAGCCAAGATCAATTGAGGAAGCTGTTCGAACACCATGGTGAAATTGCAAAAATTGTGCTGCCTCCTGCGAAATCCGGGCAGGAAAGGAGGTTTGGCTTTGTTCATTTTGCTGAACGGTCATCAGCCATGAAGGCGCTTAAAAACACTGAGCGTTACGAAATTGACGGTGAAGTTATTGAGTGCTCTCTTGCGAAGCCCCCAGTCGAAAAGAAGGCAGAATCCAGATCTAGCGCGCTCAAAGGCAATCACCTTCCAAACTATGCTTCTGCGCGCGTTGGGTATGGAATTATGGGCGGTGGTCTGGCTCCAGGTTTTGCGCCGGCGATGATCTATGGAGGAAGACAAGCAGGCGTCGGCGGCACAGCAATGGTGCCCATGGTCTTACCTGACGGGCGCATTGCATACGTTGTGTAA

Network for GWHGAAEX000399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	126	196	4.10E-19
PF00076.21	RRM_1	206	275	2.70E-08
PF00076.21	RRM_1	304	372	1.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	107.170
SRP064423	SRR2545915	Juvenile tuber	105.760
SRP108465	SRR5643513	five period of Gastrodia elata	35.550
	SRR5643514	five period of Gastrodia elata	29.830
	SRR5643515	five period of Gastrodia elata	28.630
	SRR5643524	five period of Gastrodia elata	27.350
	SRR5643525	five period of Gastrodia elata	12.000
	SRR5643528	five period of Gastrodia elata	13.740
	SRR5643658	five period of Gastrodia elata	14.190
	SRR5643659	five period of Gastrodia elata	42.080
	SRR5643660	five period of Gastrodia elata	48.380
	SRR5643661	five period of Gastrodia elata	42.000
	SRR5643662	five period of Gastrodia elata	39.760
	SRR5643663	five period of Gastrodia elata	41.570
	SRR5643664	five period of Gastrodia elata	47.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	67.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.990
SRP279888	Gastro	Gastrodia elata tuber	49.35
	Juven	Juvenile tuber	51.94
	Mother_Gastro	Mother tuber of Gastrodia elata	19.33
	Mother_Juven	Mother tuber of Juvenile	34.63