Detail information of GWHGAAEX000402/evm.TU.scaffold_1.95


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428309529|ref|YP_007120506.1|3.00E-110ribulose-5-phosphate 3-epimerase [Microcoleus sp. PCC 7113]
KOGKOG31114.00E-154D-ribulose-5-phosphate 3-epimerase
nrgi|571532296|ref|XP_006600231.1|3.98E-156PREDICTED: uncharacterized protein LOC100817791 isoform X1 [Glycine max]
Swissprottr|Q9ZTP5|RPE_ORYSJ3.00E-154Ribulose-phosphate 3-epimerase, chloroplastic (Precursor)
trEMBLtr|I1MTV4|I1MTV4_SOYBN1.00E-156Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G10990.5}
TAIRAT5G614104.00E-154D-ribulose-5-phosphate-3-epimerase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000842440444270267-
Transcript Sequence

Network for GWHGAAEX000402

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00834.18Ribul_P_3_epim692678.50E-88
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01783rpe, RPE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Pentose and glucuronate interconversionsmap00040
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0016857Molecular Functionracemase and epimerase activity, acting on carbohydrates and derivatives
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.260
SRR2545915Juvenile tuber49.420
SRP108465SRR5643513five period of Gastrodia elata28.880
SRR5643514five period of Gastrodia elata28.120
SRR5643515five period of Gastrodia elata29.190
SRR5643524five period of Gastrodia elata29.260
SRR5643525five period of Gastrodia elata34.520
SRR5643528five period of Gastrodia elata26.340
SRR5643658five period of Gastrodia elata34.600
SRR5643659five period of Gastrodia elata38.300
SRR5643660five period of Gastrodia elata42.130
SRR5643661five period of Gastrodia elata32.700
SRR5643662five period of Gastrodia elata39.490
SRR5643663five period of Gastrodia elata46.240
SRR5643664five period of Gastrodia elata39.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.170
SRR6049655Rhizomagastrodiae_C368-T10_good_122.950
SRR6049656Rhizomagastrodiae_C368-T07_good_135.320
SRR6049657Rhizomagastrodiae_C368-T07_good_132.590
SRR6049658Rhizomagastrodiae_C368-T04_good_129.160
SRR6049659Rhizomagastrodiae_C368-T04_good_134.620
SRR6049660Rhizomagastrodiae_C368-T01_good_130.280
SRR6049661Rhizomagastrodiae_C368-T04_good_130.290
SRR6049662Rhizomagastrodiae_C368-T01_good_132.800
SRR6049663Rhizomagastrodiae_C368-T01_good_131.370
SRR6049664Rhizomagastrodiae_C368-T10_good_129.920
SRR6049665Rhizomagastrodiae_C368-T10_good_129.920
SRP279888GastroGastrodia elata tuber 41.38
JuvenJuvenile tuber36.90
Mother_GastroMother tuber of Gastrodia elata 23.72
Mother_JuvenMother tuber of Juvenile 23.07