Detail information of GWHGAAEX000407/evm.TU.scaffold_1.100


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743754996|ref|XP_010928309.1|6.34E-64PREDICTED: tryptophan aminotransferase-related protein 3-like [Elaeis guineensis]
Swissprottr|Q9FE98|TAR3_ARATH3.00E-47Tryptophan aminotransferase-related protein 3
trEMBLtr|A0A067GYR0|A0A067GYR0_CITSI1.00E-55Uncharacterized protein {ECO:0000313|EMBL:KDO83815.1}
TAIRAT1G340401.00E-46Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000844866854487653+
Transcript Sequence

Network for GWHGAAEX000407

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04864.12Alliinase_C11441.90E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity
GO:0016846Molecular Functioncarbon-sulfur lyase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms98.690
SRR2545915Juvenile tuber71.390
SRP108465SRR5643513five period of Gastrodia elata11.690
SRR5643514five period of Gastrodia elata7.370
SRR5643515five period of Gastrodia elata7.630
SRR5643524five period of Gastrodia elata8.460
SRR5643525five period of Gastrodia elata6.830
SRR5643528five period of Gastrodia elata6.090
SRR5643658five period of Gastrodia elata8.240
SRR5643659five period of Gastrodia elata8.210
SRR5643660five period of Gastrodia elata10.630
SRR5643661five period of Gastrodia elata10.050
SRR5643662five period of Gastrodia elata8.570
SRR5643663five period of Gastrodia elata6.920
SRR5643664five period of Gastrodia elata9.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.430
SRR6049655Rhizomagastrodiae_C368-T10_good_146.030
SRR6049656Rhizomagastrodiae_C368-T07_good_166.860
SRR6049657Rhizomagastrodiae_C368-T07_good_154.020
SRR6049658Rhizomagastrodiae_C368-T04_good_180.610
SRR6049659Rhizomagastrodiae_C368-T04_good_188.450
SRR6049660Rhizomagastrodiae_C368-T01_good_165.230
SRR6049661Rhizomagastrodiae_C368-T04_good_181.290
SRR6049662Rhizomagastrodiae_C368-T01_good_150.810
SRR6049663Rhizomagastrodiae_C368-T01_good_168.850
SRR6049664Rhizomagastrodiae_C368-T10_good_143.230
SRR6049665Rhizomagastrodiae_C368-T10_good_143.230
SRP279888GastroGastrodia elata tuber 37.65
JuvenJuvenile tuber23.05
Mother_GastroMother tuber of Gastrodia elata 42.20
Mother_JuvenMother tuber of Juvenile 16.17