Detail information of GWHGAAEX000410/evm.TU.scaffold_1.103
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672200018|ref|XP_008777767.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Phoenix dactylifera] |
| Swissprot | tr|Q9FIB2|PP373_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g09950 |
| trEMBL | tr|V4W4R4|V4W4R4_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR61044.1} |
| TAIR | AT5G09950 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 4547323 | 4552990 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000410
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 123 | 169 | 1.40E-12 |
| PF01535.19 | PPR | 231 | 258 | 0.0021 |
| PF01535.19 | PPR | 315 | 341 | 0.016 |
| PF13041.5 | PPR_2 | 446 | 492 | 4.10E-08 |
| PF01535.19 | PPR | 623 | 646 | 0.0022 |
| PF01535.19 | PPR | 652 | 681 | 2.80E-05 |
| PF01535.19 | PPR | 725 | 748 | 0.19 |
| PF13041.5 | PPR_2 | 751 | 797 | 1.00E-09 |
| PF01535.19 | PPR | 825 | 849 | 0.087 |
| PF14432.5 | DYW_deaminase | 928 | 1050 | 1.00E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.350 |
| SRR2545915 | Juvenile tuber | 0.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.370 |
| SRR5643514 | five period of Gastrodia elata | 1.280 | |
| SRR5643515 | five period of Gastrodia elata | 1.450 | |
| SRR5643524 | five period of Gastrodia elata | 1.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.480 | |
| SRR5643528 | five period of Gastrodia elata | 0.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.120 | |
| SRR5643659 | five period of Gastrodia elata | 2.070 | |
| SRR5643660 | five period of Gastrodia elata | 1.910 | |
| SRR5643661 | five period of Gastrodia elata | 2.080 | |
| SRR5643662 | five period of Gastrodia elata | 1.960 | |
| SRR5643663 | five period of Gastrodia elata | 1.270 | |
| SRR5643664 | five period of Gastrodia elata | 1.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.18 |
| Juven | Juvenile tuber | 1.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.91 | |
| Mother_Juven | Mother tuber of Juvenile | 0.52 |