Detail information of GWHGAAEX000412/evm.TU.scaffold_1.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226313252|ref|YP_002773146.1| | 7.00E-15 | naringenin-chalcone synthase [Brevibacillus brevis NBRC 100599] |
| nr | gi|743797793|ref|XP_010925069.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 4-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZUZ0|KCS13_ARATH | 9.00E-127 | 3-ketoacyl-CoA synthase 13 (Precursor) |
| trEMBL | tr|I1IPJ5|I1IPJ5_BRADI | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT2G46720 | 3.00E-126 | 3-ketoacyl-CoA synthase 13 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 4581545 | 4601831 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000412
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 53 | 335 | 4.20E-99 |
| PF08541.9 | ACP_syn_III_C | 351 | 431 | 1.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.690 |
| SRR2545915 | Juvenile tuber | 2.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.750 |
| SRR5643514 | five period of Gastrodia elata | 3.920 | |
| SRR5643515 | five period of Gastrodia elata | 6.240 | |
| SRR5643524 | five period of Gastrodia elata | 6.400 | |
| SRR5643525 | five period of Gastrodia elata | 5.550 | |
| SRR5643528 | five period of Gastrodia elata | 4.160 | |
| SRR5643658 | five period of Gastrodia elata | 3.260 | |
| SRR5643659 | five period of Gastrodia elata | 5.350 | |
| SRR5643660 | five period of Gastrodia elata | 6.300 | |
| SRR5643661 | five period of Gastrodia elata | 7.190 | |
| SRR5643662 | five period of Gastrodia elata | 5.870 | |
| SRR5643663 | five period of Gastrodia elata | 5.260 | |
| SRR5643664 | five period of Gastrodia elata | 6.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.43 |
| Juven | Juvenile tuber | 9.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.36 | |
| Mother_Juven | Mother tuber of Juvenile | 13.30 |