Gene detail

Detail information of GWHGAAEX000420/evm.TU.scaffold_1.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383457305\|ref\|YP_005371294.1\|	3.00E-65	enoyl-CoA hydratase [Corallococcus coralloides DSM 2259]
KOG	KOG1684	0	Enoyl-CoA hydratase
nr	gi\|672113067\|ref\|XP_008809029.1\|	0	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9T0K7\|HIBC6_ARATH	0	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial (Precursor)
trEMBL	tr\|C0HHJ2\|C0HHJ2_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:ACN26495.1, ECO:0000313\|EnsemblPlants:GRMZM2G047564_P03}
TAIR	AT4G13360	0	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	5148677	5222650	+

Transcript Sequence
>GWHTAAEX000420 CTGATATAAGTCGCTCACCCAAATGGTCAGACTTCCTTGCATATCCTTTCAAGAATGCCACGACTGCTCTCTCGACAGCTTAAGACCCTTTTCCTCTCTCATTTCGTCTCTAATCATAAACCTCCTGCACTAATTCCTACTTTATCTGCCGTTGCTCCATCAAAAGCTCTGCATTCCTCGCCCCGCCTATTAACAACCATGTCTGGCTCGGCAGATGAATTTGTCAGAGGGAAGGTCTTCCCCAACGGGCTTGCCGTCATCACCCTTGACCGCCCTAAAGCCCTCAATGCAATGAATTTTGAAATGGACATAAAATACAAGGCATATCTAGATGAATGGGAAAGCAATCAAAATGTGAAATGCGTCCTGGTTGAAAGTAGCTCATCTCGTGCTTTTTCTGCAGGAATGGATATTAAGGGTGTTGTGAATGAAATTCAGAAGGATAAAAATACAACACTTGTGCAAAAGGTATTTGCTGCAGAATACTCTTTGATATGTAAAATATTTGACTATCAAAAGCCTTATCTTTGTTTCATGGATGGAGTGACCATGGGATTTGGCATTGGACTTTCAGGTCATGGCTGTTATCGTATTATTACTGAGAAAACTCTTCTAGCAATGCCAGAAAATGGAATTGGCTTGTTCCCTGATGTTGGCTTTGCTTATTTAGCTGCGCAAAGCCCAGGAGGTGGTGCTGTTGGGAGTTACCTTGCAATGACTGGCAAAAGAATTTCATCTCCTAGTGATGCATTGTTTGTTGGCCTTGGAACTCATTACGTGCCATCTGAAAACTTGGCATCTCTTAGAGAGAACCTTCACTCACAAAACTTTTCTGGGGATGCCCATTTGAATGTGCAAACGCTTTTAGCACAATTTAGTAAGGAGCCTAATTCTGATGCTCATTTGAAGTTGCTTTTGCCCTATATAGCATCATCATTTAGAGTGGAAAATACAGTTCCTGAAATATTTGAAGAATTAAAGAAGCACGAACTAAATACTGATGACAAAGTGGCTGAATGGGCATATGATGCTATTCAAGGACTTGGGAAAGGTGCACCATTCTCTCTCTGTTTGACCAAAAGCCACTTCTCCAAGGTTGCATCTGCAAATAGAAATGATGATCATCATTTATCAAAACTTCATGGTGTAATGAAAACCGAATATCGAATAGCTTTGAGGTCATCAAGTCGCGATGATTTTGTTGAAGGTGTAAGGGCTGTGTTGGTGGACAAAGATCAGAACCCAAAGTGGAACCCTGCAAGATTAGAGGACGTTGACATGAATGAAATTGAGTCAGCTTTTGAGCCCTTGCCTGCTGATGAAGAGCTAACAGTATGAATCAAAGGTGCAGTAATCAACCGGCCTGTATATTTTCTAGGTGAATTCAAGAAACCAAGCTTATGCAGTTCCAATATCAAATTTTATGAGATTGTTAAGCGGATTTTGATTCAGTTATCTTTCAGTGTACAATATATCAACCCACAAGCTATTCTGTCCAATTTTAAGAATGCAGCAGCATTATCTGCAGCTCTGCATGATTGATTCTTCCTTGTCTTTAGCTCTTTATGTAAAATCCTCCATTGTCATTTATTCCAGATTCTGTAATTAAAAATTTCTTTCTTTTACCCTTATAAATTTACTTTTTAGAAATCAAAATGTGTTCAAAGATGGGGGAATAGTGCTCAATGTTGGCTTTTAGAGCTCAATAGAAAACTTCCAGAGCTCTCAAGAGGCTAATTAGTTTACTGCAATGAAAATTTAGAGACAATTCAATTACACTAATTGTATTTTAGATAATAAATAGATTGGCTTAATTTTAT

Network for GWHGAAEX000420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.4	ECH_2	67	416	1.40E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Cysteine and methionine metabolism	map00270
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.570
SRP064423	SRR2545915	Juvenile tuber	31.860
SRP108465	SRR5643513	five period of Gastrodia elata	15.780
	SRR5643514	five period of Gastrodia elata	21.000
	SRR5643515	five period of Gastrodia elata	15.040
	SRR5643524	five period of Gastrodia elata	20.670
	SRR5643525	five period of Gastrodia elata	18.080
	SRR5643528	five period of Gastrodia elata	19.320
	SRR5643658	five period of Gastrodia elata	20.230
	SRR5643659	five period of Gastrodia elata	15.100
	SRR5643660	five period of Gastrodia elata	14.830
	SRR5643661	five period of Gastrodia elata	14.870
	SRR5643662	five period of Gastrodia elata	12.160
	SRR5643663	five period of Gastrodia elata	11.830
	SRR5643664	five period of Gastrodia elata	10.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.520
SRP279888	Gastro	Gastrodia elata tuber	18.30
	Juven	Juvenile tuber	10.46
	Mother_Gastro	Mother tuber of Gastrodia elata	22.07
	Mother_Juven	Mother tuber of Juvenile	10.52