Gene detail

Detail information of GWHGAAEX000425/evm.TU.scaffold_1.121

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158335270\|ref\|YP_001516442.1\|	1.00E-35	hypothetical protein AM1_2113 [Acaryochloris marina MBIC11017]
KOG	KOG2878	2.00E-158	Predicted kinase
nr	gi\|672182677\|ref\|XP_008811589.1\|	0	PREDICTED: D-glycerate 3-kinase, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q944I4\|GLYK_ARATH	6.00E-163	D-glycerate 3-kinase, chloroplastic (Precursor)
trEMBL	tr\|A0A061GC21\|A0A061GC21_THECC	9.00E-173	P-loop containing nucleoside triphosphate hydrolases superfamily protein {ECO:0000313\|EMBL:EOY26652.1}
TAIR	AT1G80380	2.00E-158	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	5396900	5423374	-

Transcript Sequence
>GWHTAAEX000425 CCTCATTTACATATTTAACATAAATTGTTTAAGAAAACTCACAAATTTTTTGAATACAACAAAAAAAATCACATTTTTCGCAGCGCGTTCAACTACAAGTTTATAATGTATCTAAAATTGTGCGGCTTTTAAAGCTGTGCGGCTGCTCGAGAACGACTGCTTGCTGATGACCATGGACGCTATCTTCGAGTTCATTTGCAGGGGCTCTCTTTTGGAGAAGATGGGGTTTACTATTGATAGAGTGAAGGAGGGTATCGACAAATGGGTGCTCTACGGGGAATATCTATGCCGCCTATTTGGAATAAGTGGGTTCGGATTGACTTCGCAGGAGAAGGCGAGGGTGTATCACTTCTACGTTCCTGTCTTCCTCTGGTGCGAGGATCAGATCCAGCGGCATGTATCGGGGTTTGGAGATACGGAGGAAGGGACCCCTCCGCTAATGATTGGCATTAGTGCTCCTCAGGGCAGTGGCAAAACGACACTTACATTTGCATTAGAGCATCTCTTCCGTCAGACAGGCAGGGATGTGGCATCATTGTCAATTGATGATTTTTATTTAACATATGATGAACAGGTCAAATTAAGGAGCCAGAACCCCGGAAATGTTCTCCTGGAGCTTCGTGGGAATGCTGGAAGCCATGACCTACAATTCTCTATGGAAACGCTCACCGCTCTAAAAAACTTGACAAAAGCAGGCATGAAGATGAAGCTGCCACGGTATGATAAGTCTGCTAGTGGAGGGCGGGGTGACAGAGCTGACCTTTCAGCATGGCCAGAGATCGAAGGTCCTCTAACGGTTGTTTTATTTGAAGGCTGGATGCTTGGCTTTAAACCTCTCCCAAATGATTACGTCAAAACAGTTGACCCACAGCTTGATATTATAAACAGAAACCTCGAAGCTTACTATGAAGCATGGGACAGATTTATAGATACATGGTTAATTATTAAGATCAACGATCTCAATTGTGTATATCAGTGGAGACTGCAGGCTGAAGTAGCCATGAGAGATGCTGGGAAACCTGGCATGTCAAATGCAGAGGTCATGGACTTTGTGTCTCGGTATATGCCTGCCTATAAAGCTTATCTTCCAGCACTGTATTCTGAGGGGCCGAGAGATTTGGACAGGCGGCGGCTTCTAACAATTGACATTGATGAGCACAGAAATCCCGTTTCAGAGGTATGCAATATATAGATGAATTGTGAGTTTATTCTTCTTATAATCTTAGTTTCTGTGCTTTCACTATAACTTGATTTATTTAAGAGATGTGGATAAATATATGTATTGGTACAATAGCATATTTTCTCTTCAGTACAGTTAATATAATTAGAGTGGTTAAAAAGAAAATGATTTGACGAATACCTCAAAAGGTTGGATGATTATAATTTATACTTAAAATATGTGCTTTTTAGTAAGGCTCGCACACAAAAGTTTGTTGTGAATTTTTGGTAGCTTTATTTTAGATAAGAGAAATGTTTGGCATTTAGAAAGGGAAAGAGGATGGAACCAATCTTCCTTTTTAATTCATTTCTTAAAACTTTTTGGAGAGAAATCAAGGTATTGTTGTAGTGATTGAAAGTATTTTTCCTTAGAATTGA

Network for GWHGAAEX000425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15918	GLYK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycerolipid metabolism	map00561
		Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.750
SRP064423	SRR2545915	Juvenile tuber	18.230
SRP108465	SRR5643513	five period of Gastrodia elata	10.910
	SRR5643514	five period of Gastrodia elata	21.470
	SRR5643515	five period of Gastrodia elata	19.290
	SRR5643524	five period of Gastrodia elata	19.150
	SRR5643525	five period of Gastrodia elata	6.600
	SRR5643528	five period of Gastrodia elata	4.480
	SRR5643658	five period of Gastrodia elata	7.750
	SRR5643659	five period of Gastrodia elata	31.400
	SRR5643660	five period of Gastrodia elata	28.420
	SRR5643661	five period of Gastrodia elata	23.300
	SRR5643662	five period of Gastrodia elata	17.550
	SRR5643663	five period of Gastrodia elata	19.110
	SRR5643664	five period of Gastrodia elata	16.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.230
SRP279888	Gastro	Gastrodia elata tuber	17.21
	Juven	Juvenile tuber	51.83
	Mother_Gastro	Mother tuber of Gastrodia elata	18.25
	Mother_Juven	Mother tuber of Juvenile	25.94