Detail information of GWHGAAEX000437/evm.TU.scaffold_1.135
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-174 | FOG: PPR repeat |
| nr | gi|743831269|ref|XP_010934638.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9M4P3|PP316_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial (Precursor) |
| trEMBL | tr|N1R088|N1R088_AEGTA | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMT17491.1} |
| TAIR | AT4G16840 | 1.00E-174 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 5794593 | 5796675 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000437
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 83 | 111 | 8.50E-05 |
| PF01535.19 | PPR | 113 | 137 | 0.003 |
| PF01535.19 | PPR | 148 | 173 | 0.00035 |
| PF13041.5 | PPR_2 | 174 | 220 | 8.30E-11 |
| PF13041.5 | PPR_2 | 275 | 323 | 1.20E-13 |
| PF01535.19 | PPR | 350 | 374 | 0.0036 |
| PF14432.5 | DYW_deaminase | 449 | 573 | 5.20E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.100 |
| SRR2545915 | Juvenile tuber | 0.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.390 |
| SRR5643514 | five period of Gastrodia elata | 1.970 | |
| SRR5643515 | five period of Gastrodia elata | 2.070 | |
| SRR5643524 | five period of Gastrodia elata | 1.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.220 | |
| SRR5643528 | five period of Gastrodia elata | 0.340 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 2.000 | |
| SRR5643660 | five period of Gastrodia elata | 1.370 | |
| SRR5643661 | five period of Gastrodia elata | 2.150 | |
| SRR5643662 | five period of Gastrodia elata | 1.940 | |
| SRR5643663 | five period of Gastrodia elata | 1.620 | |
| SRR5643664 | five period of Gastrodia elata | 2.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.91 |
| Juven | Juvenile tuber | 0.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.52 | |
| Mother_Juven | Mother tuber of Juvenile | 0.21 |