Gene detail

Detail information of GWHGAAEX000438/evm.TU.scaffold_1.136

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743869479\|ref\|XP_010905821.1\|	0	PREDICTED: LOW QUALITY PROTEIN: polycomb group protein EMBRYONIC FLOWER 2-like [Elaeis guineensis]
Swissprot	tr\|Q8L6Y4\|EMF2_ARATH	2.00E-123	Polycomb group protein EMBRYONIC FLOWER 2
trEMBL	tr\|Q1W6K9\|Q1W6K9_ASPOF	0	Polycomb group protein EMF2 {ECO:0000313\|EMBL:ABD85301.1}
TAIR	AT5G51230	1.00E-78	VEFS-Box of polycomb protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	5802664	5865487	-

Transcript Sequence
>GWHTAAEX000438 TTATTTCGATTATTTTTGACGTCGTTAGCTGCTCTAGCGACTCCTGATCCCTAAGTAGCATCCAGCGGCTAGGAAGTCAATTCGATGTGGCGGCCTGCGCAGGTCGCAGCCAGCAGGATTCTTTGAAGGCAAACGACGACTCTCGACAGTCGGCACAGTGATCAGGCATTCACAACTGTAGTTTGGCGAAACCCTACAAAACTACAGAGGACTATTGGCTTTACTGAACTTTAAGTGAATTGCAAGTATCGTTTGCTGAGAATTTTAACGCTTAGTTCACATGGTCTTGTCTACAAAGATGTGAGCTTTCTTATACCTCAAAGCCAGAATGCCAGGCTTGCCTTTTGTTGATAATGAGGCCGTGGCCTTTGGTTGCAGTTGTAGCCGTTCTAGGACTACAGAGCAGATGTGCCGTCAGCAATCAAGGGTTTGCTTAACTGCTGCGGAGGAAGTTGCAGCTGAAGAAAGCCTTTCAATATACTGCAAACCTGTTGAATTCTATAATATTCTTCAGCGGCGCGCTATACGGAAACCATCATTTTTACAGAGATGTTTACAGTATAAGATACAAGCAAAACACAAAAGAAGAATTCAAATAACTATAGCACTACCTGGACATATGAATTCTGAACTACGGCAACATAATCTATTCCCTCTGTATGCGATGTTAGTTAGACCTATTGCAAATATAACTCTTGGAGAGCAATCTGCTGTTTATGGAGTCTGCCGATCTCACATGCTATCTTCATTCTATGAATATGGAAAGACAGAGACAGAAGCTACTTTTGTCATTCCTGAGATTAGAAAGCTGTCCGCTGCTCGTGGTGCCAATGTAAATTTGGTTCTTGTCAGTATTGGTGAAGCTCAAGGTACTTCTGATGAGAACCATTTACCAGAGGGTGGTGAGTGCCTTAACACCTTCCCAGCTAAACTTGAAGGTAATTGTTTTTGGGCGAAGGTACCAATTGAATCACTCTATTCATCTCTTGAGAAGTGTGTTACCTTGACATTGGGACACAAATCTGAGATGATTTCAAGTTTAGATATGCACTCTAGCATTTTGAAGTCTAGTTTCTTGGATCAACACAGTTGTTTGAATTTTAGAAACAATAATATCGATTCTCAGGGTTCATACAAAGTACAAGTAAGTTTATGTGCTCAAGAAGTAGGAGCTAAAGAGAGGTCACCTTATGATTCTTATACTTATAGTGATGTTCCTGCATCAACATTGCCTCACATTATCAGGTTGAGATCTGGAAATGTTTTATTTAACTATAGGTATTTCAACAACAAGCTGCAAAAAACTGAAGTTACTGAGGATTTCTCCTGCCCATTTTGCTTGGTGCAATGCGCTAGTTTCAAGGGTCTTAGATTTCATTTGTGTTCATGCCACGACTTATTCAATTTTGAATTTTGGGTAACTGAGGAGTACCAAGCTGTGAATGTTTCGGTTAGGACTGATGTTTTACGGTCTGAGGCCCTCTCAGATGGAGTTGATCCAAGGCTGCAGACATTCTTTTACTGCTCAAAATTTAGGAGGCGAAGAAGATCAAAAAATTTTGCACAGAATTTAAATGATATTCAACCTTATGTTTTGGAGCTAGACTCTCCTGAGGAAGCAATGGGAGGCTCTGAAAATGGTTATTTGCAAAAGGGAACGAATATATCTTCTTCCTGTATGCACGTTTCATATCCCAGTGTTGCTGTGCACCCAAATGGATTTAGCGATGTGAGCTCTTACAAAGTTGATGAAAAGATTGAAAAAATTTCGTATGGCGAAGCCCAGCTGCTATTAACAAGGCAGAAATCTGAAAGCTATGGTTCGGAGAATCATCATGTTGCAGATTGTACTGATCGCATGACTTCAAGCCCAGATACTGCGACGTTCTGTGTTTCTACTGCCCAAGCTTCTACAAGTAATGATTGTGCTCATCCATTATCTGCGAGTAACTCATTGTCCTCCACGATGTTGCAATTTGCAAAGACTCGCAGACTTTCTGTCGAACGAGTTGATCCTAGAAGGGCTTTACTCACAAAGCGACAATTTTTTCATTCTCATAGAGCTCAGCCAATGGCATTGGAGCAAGTATTTTCAGATCATGACAGTGAAGATGAAGTTGATGATGACATCGCTGATTTTGAAGACAGAAGGATGCTAGATGATTTTGTTGATGTCACAAATGATGAAAAGCACATAATGCATCTATGGAATTCTTTTGTAAGGAAGCAAAGAGTGTTGGCGGATGGTCACATCCCATGGGCGTGCGAGGCATTTACACAGCTTCATGGGCAAGATTTTGTTCGGACACCAGCTTTATTTTGGAGCTGGAGGCTATTTATGATTAAGCTATGGAATCACAGCCTGTTGGATTCTCGCACAATGAACAACTGTAACATCATTCTGGAAAAGTTTCAGAAGGAAAACTTAGATGTCAAGCCTACTAGTTAACTCGTTTTTGGCCTCATCCTGTCACAGCCAGTCGTCTCTGGGGGCATTCTTTTATAGGGGATATTGTTATTGATATATAGTTGGGGCGGCTGATTTTAAATTTTAAATTCTTATAGACAGACTCCTGCTATTGTTTCCATTCATGGTGGGATCCCTACAAAAAATGGAAAGGATTTATACTGTTCATTTTCGAAATGTGATTCAGGCTTTTGTGCCTTTAAATCTATAGAAAAAACTTAAGAACATTTTGTTTAAATTAAGGCATGAAAGCATTCGGAGAGTGCTTCTTTTCGCACTACGCAAGCTCAACAGTTCCTCAT

Network for GWHGAAEX000438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09733.8	VEFS-Box	558	690	6.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.980
SRP064423	SRR2545915	Juvenile tuber	48.940
SRP108465	SRR5643513	five period of Gastrodia elata	24.610
	SRR5643514	five period of Gastrodia elata	21.310
	SRR5643515	five period of Gastrodia elata	21.030
	SRR5643524	five period of Gastrodia elata	23.140
	SRR5643525	five period of Gastrodia elata	20.600
	SRR5643528	five period of Gastrodia elata	19.920
	SRR5643658	five period of Gastrodia elata	23.730
	SRR5643659	five period of Gastrodia elata	22.630
	SRR5643660	five period of Gastrodia elata	24.730
	SRR5643661	five period of Gastrodia elata	21.020
	SRR5643662	five period of Gastrodia elata	20.530
	SRR5643663	five period of Gastrodia elata	18.980
	SRR5643664	five period of Gastrodia elata	23.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.670
SRP279888	Gastro	Gastrodia elata tuber	34.96
	Juven	Juvenile tuber	37.71
	Mother_Gastro	Mother tuber of Gastrodia elata	35.78
	Mother_Juven	Mother tuber of Juvenile	44.65