Detail information of GWHGAAEX000440/evm.TU.scaffold_1.139


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672133810|ref|XP_008790541.1|5.96E-86PREDICTED: uncharacterized protein LOC103707719 isoform X2 [Phoenix dactylifera]
Swissprottr|Q6JB11|MEG5_MAIZE2.00E-40Protein MATERNALLY EXPRESSED GENE 5
trEMBLtr|M0SE09|M0SE09_MUSAM1.00E-83Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P12420_001}
TAIRAT1G769408.00E-28RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000859781295994637+
Transcript Sequence

Network for GWHGAAEX000440

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11251914.80E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.430
SRR2545915Juvenile tuber44.570
SRP108465SRR5643513five period of Gastrodia elata68.360
SRR5643514five period of Gastrodia elata64.410
SRR5643515five period of Gastrodia elata60.150
SRR5643524five period of Gastrodia elata63.960
SRR5643525five period of Gastrodia elata55.960
SRR5643528five period of Gastrodia elata61.170
SRR5643658five period of Gastrodia elata41.430
SRR5643659five period of Gastrodia elata92.000
SRR5643660five period of Gastrodia elata92.640
SRR5643661five period of Gastrodia elata96.050
SRR5643662five period of Gastrodia elata100.300
SRR5643663five period of Gastrodia elata95.830
SRR5643664five period of Gastrodia elata89.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.910
SRR6049655Rhizomagastrodiae_C368-T10_good_166.450
SRR6049656Rhizomagastrodiae_C368-T07_good_174.200
SRR6049657Rhizomagastrodiae_C368-T07_good_156.140
SRR6049658Rhizomagastrodiae_C368-T04_good_166.160
SRR6049659Rhizomagastrodiae_C368-T04_good_153.720
SRR6049660Rhizomagastrodiae_C368-T01_good_160.420
SRR6049661Rhizomagastrodiae_C368-T04_good_167.720
SRR6049662Rhizomagastrodiae_C368-T01_good_189.820
SRR6049663Rhizomagastrodiae_C368-T01_good_182.480
SRR6049664Rhizomagastrodiae_C368-T10_good_190.020
SRR6049665Rhizomagastrodiae_C368-T10_good_190.020
SRP279888GastroGastrodia elata tuber 120.11
JuvenJuvenile tuber90.02
Mother_GastroMother tuber of Gastrodia elata 58.12
Mother_JuvenMother tuber of Juvenile 73.60