Detail information of GWHGAAEX000442/evm.TU.scaffold_1.141
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672172539|ref|XP_008806365.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9FFE3|PP388_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g16420, mitochondrial (Precursor) |
| trEMBL | tr|M0TYP6|M0TYP6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08870_001} |
| TAIR | AT5G16420 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 5998722 | 6000455 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000442
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 151 | 211 | 0.00023 |
| PF13041.5 | PPR_2 | 232 | 281 | 5.70E-13 |
| PF13041.5 | PPR_2 | 302 | 351 | 1.80E-16 |
| PF01535.19 | PPR | 380 | 402 | 0.86 |
| PF01535.19 | PPR | 413 | 436 | 0.00066 |
| PF13041.5 | PPR_2 | 441 | 490 | 3.00E-20 |
| PF01535.19 | PPR | 515 | 544 | 0.25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.880 |
| SRR2545915 | Juvenile tuber | 5.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.330 |
| SRR5643514 | five period of Gastrodia elata | 9.160 | |
| SRR5643515 | five period of Gastrodia elata | 9.500 | |
| SRR5643524 | five period of Gastrodia elata | 9.960 | |
| SRR5643525 | five period of Gastrodia elata | 12.040 | |
| SRR5643528 | five period of Gastrodia elata | 10.230 | |
| SRR5643658 | five period of Gastrodia elata | 10.980 | |
| SRR5643659 | five period of Gastrodia elata | 12.810 | |
| SRR5643660 | five period of Gastrodia elata | 13.820 | |
| SRR5643661 | five period of Gastrodia elata | 14.880 | |
| SRR5643662 | five period of Gastrodia elata | 17.050 | |
| SRR5643663 | five period of Gastrodia elata | 15.280 | |
| SRR5643664 | five period of Gastrodia elata | 10.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.07 |
| Juven | Juvenile tuber | 8.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.23 | |
| Mother_Juven | Mother tuber of Juvenile | 8.66 |