Detail information of GWHGAAEX000456/evm.TU.scaffold_1.156
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1946 | 7.00E-83 | RNA polymerase I transcription factor UAF |
| nr | gi|670433501|ref|XP_008657228.1| | 0 | PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1 [Zea mays] |
| Swissprot | tr|Q9SIV5|C3H19_ARATH | 2.00E-126 | Zinc finger CCCH domain-containing protein 19 |
| trEMBL | tr|K7W4N1|K7W4N1_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFW85105.1, ECO:0000313|EnsemblPlants:GRMZM2G350447_P01} |
| TAIR | AT3G51120_2 | 7.00E-83 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 6483347 | 6553153 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000456
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02201.17 | SWIB | 586 | 656 | 6.90E-14 |
| PF03126.17 | Plus-3 | 715 | 818 | 1.00E-22 |
| PF02213.15 | GYF | 1048 | 1089 | 2.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.510 |
| SRR2545915 | Juvenile tuber | 23.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.440 |
| SRR5643514 | five period of Gastrodia elata | 15.980 | |
| SRR5643515 | five period of Gastrodia elata | 11.810 | |
| SRR5643524 | five period of Gastrodia elata | 15.120 | |
| SRR5643525 | five period of Gastrodia elata | 11.240 | |
| SRR5643528 | five period of Gastrodia elata | 8.200 | |
| SRR5643658 | five period of Gastrodia elata | 12.330 | |
| SRR5643659 | five period of Gastrodia elata | 13.100 | |
| SRR5643660 | five period of Gastrodia elata | 14.650 | |
| SRR5643661 | five period of Gastrodia elata | 12.770 | |
| SRR5643662 | five period of Gastrodia elata | 11.560 | |
| SRR5643663 | five period of Gastrodia elata | 12.810 | |
| SRR5643664 | five period of Gastrodia elata | 14.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.99 |
| Juven | Juvenile tuber | 21.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.19 | |
| Mother_Juven | Mother tuber of Juvenile | 15.44 |