Detail information of GWHGAAEX000462/evm.TU.scaffold_1.171


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29347.00E-64Uncharacterized conserved protein, contains Josephin domain
nrgi|743864054|ref|XP_010943936.1|8.26E-84PREDICTED: josephin-like protein isoform X2 [Elaeis guineensis]
Swissprottr|O82391|JOSL_ARATH2.00E-64Josephin-like protein
trEMBLtr|B6T783|B6T783_MAIZE4.00E-76Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G049041_P01}
TAIRAT2G296407.00E-64JOSEPHIN-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000874338657446004-
Transcript Sequence

Network for GWHGAAEX000462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02099.16Josephin111745.20E-37
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJosephin

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016579Biological Processprotein deubiquitination
GO:0004843Molecular Functionthiol-dependent ubiquitin-specific protease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.570
SRR2545915Juvenile tuber13.790
SRP108465SRR5643513five period of Gastrodia elata5.990
SRR5643514five period of Gastrodia elata6.500
SRR5643515five period of Gastrodia elata7.840
SRR5643524five period of Gastrodia elata7.310
SRR5643525five period of Gastrodia elata7.590
SRR5643528five period of Gastrodia elata9.650
SRR5643658five period of Gastrodia elata9.160
SRR5643659five period of Gastrodia elata7.680
SRR5643660five period of Gastrodia elata6.790
SRR5643661five period of Gastrodia elata7.360
SRR5643662five period of Gastrodia elata9.780
SRR5643663five period of Gastrodia elata8.740
SRR5643664five period of Gastrodia elata6.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.610
SRR6049655Rhizomagastrodiae_C368-T10_good_13.230
SRR6049656Rhizomagastrodiae_C368-T07_good_16.510
SRR6049657Rhizomagastrodiae_C368-T07_good_16.370
SRR6049658Rhizomagastrodiae_C368-T04_good_14.540
SRR6049659Rhizomagastrodiae_C368-T04_good_14.920
SRR6049660Rhizomagastrodiae_C368-T01_good_17.020
SRR6049661Rhizomagastrodiae_C368-T04_good_16.100
SRR6049662Rhizomagastrodiae_C368-T01_good_17.390
SRR6049663Rhizomagastrodiae_C368-T01_good_19.200
SRR6049664Rhizomagastrodiae_C368-T10_good_18.570
SRR6049665Rhizomagastrodiae_C368-T10_good_18.570
SRP279888GastroGastrodia elata tuber 6.24
JuvenJuvenile tuber4.60
Mother_GastroMother tuber of Gastrodia elata 8.72
Mother_JuvenMother tuber of Juvenile 5.11