Gene detail

Detail information of GWHGAAEX000463/evm.TU.scaffold_1.175

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2101	3.00E-180	Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s)
nr	gi\|672137253\|ref\|XP_008792345.1\|	0	PREDICTED: uncharacterized protein LOC103708990 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|F6HYE6\|F6HYE6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59469.1}
TAIR	AT1G15240	3.00E-180	Phox-associated domain;Phox-like;Sorting nexin, C-terminal

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	7673299	7704697	+

Transcript Sequence
>GWHTAAEX000463 ATGACGAGTACCGCAAGGCATACAATGCGAGATTTAATCGATGAAGCGAAGAAACGGGTCGTACTGTTCCTAATATGCCTCTTTGGCCTCTCTTATCTCATGTCTATGACTAGTTCTTCGGTTTGGTTGAACTTTCCTGCTGCTGCTGTGTTGATCATTTTCTGCCGATATATATCACTTGACCTGGATATCCAGAGGAAATCAGAAACTGGCTCCAAACTTTCTCCTATTAATCCATCCTTTGATAAGAAACCGATTAAACTTCACAGCTTTTCTCTTGAAAGGCATAACTGGAAAAGTAAAGTGAATTCTTCTGCAGCTGAGGAGGCTATTGACCATTTTACCAGACATTTGGTTTCAGAGTGGGTGACAGATCTTTGGTATTCTCGCATAACACCTGATAGAGATGGCCCTGAAGAGCTAGTTCAGATTATAAACAATGTTCTTGGAGAAATTTCAAGCCGTGCAAGAGATATAAATCTTATTGAGCTTTTCACCAGGGATATAATAAATCTGTTTTGCAATCATCTGGAACTTTATCGTTGGAGTATCTCCAAGATTGGAAGGCAGGAATTTAAGATGCTTCCCCCTGATCGTCAGGATACTCAACTAAAGCAGGTTCTTGCCGCTGAAAACAAATTGCATCCAGCCCTGTTTTCTTCAAAAGCTGAGCACAAGGTTGTTTTACAGCATTTGGTGAATTGTCTTATGTCGACCACTTTTAGTTTCAAGGACATGCAATGCTATATCTTTCAATATACCATGAGGGAACTTCTGGCTTGTGCTGTCTTTCGTCCAATTTTAAACTTGGCAAACCCAAGGGTTATCAATGAAAAGATCGAGTCTTTGGTTATTTCCTTTGCCAACAAGAATGAAAAGGAAGTTAAGGCTTCAATAGATCAGAACGTCATAGCAAAGTTGAATGCACTTACTAAGCCATCGGCTGAACAGCTTTCTGGGTTACTAGATCGTTCTACTGTCGGTCTTGAGCTTGTACAATTTAAACCTGTCCACTCTAAAATTGCTTCAGATGAACAAGTGGCAAATATTGAAACTACTGTTTTGAAGCATCAAAATTCCCCAGGATGCACCTCTGTAGGCACTCTTGAGACAGCTTTAATGCCTGAGGCCATAGACAAAGTTTCTCAAACATCACAAAATTCTCAAATTAATTGTTTTGACCAGACTGGAGCATCCGTTTCTAAAGGGCAGTGGGGCCAGATTCTGGATATAATTTCTCAAAAGAAGCAACAAACCCTTGCACCAGAAAATCTTGAAAATGTATGGGCAAAAGGAAGAAACTATAGAAGGAAAGAAGCATCAAAGCGATTTCCAAAACAAAATGCATATGATTCTTCTGCCTGCAACAATAACATCAAGCAATCTGCAGCAACTTCTCGTCATATAAAGAAAGATGAAACAGCCTGCCTTGATGCATCCATTACCGATACCTCTGTTTCATGTCCTGATAATCTATACTTGGCTTCCAATTTGATGACTCATTCTGACACCATTGATTCAGCTTACCACCATACTCGTCCATATCAAGAAAAGACAGATGTTCTTCAGGAAGATCTTGAAATAGCTAGTGAAAGCTCATATGAAACTGATGATGAAGAAACCAGTAATGTGACTGGTATTGATTCTCCTGGAACAAGAGTTTGGGATAGTAAAAATAAAAGAAATGCTTCTGTTTCACACATAAGGCATCCTCTCGAAACGTCTGAATTTCATTCAACAAAGCTAAAGGTTAAAGCCCATGCTCGGCATCCAAGGACGCTAAGAACACCATCAGGGAGGAAAAAAATAAGGCCAAGTTATCAAAAGACCCCCCTTTGGCAGGAGATTGAGAGATCAACCTTTTTGTTAGGTGAAAGGCAGGATCTACTGAATGAGTCAACAAAAGATGCTAGAATGGAGGAATTGAATGACAACCTGGATGCTGAAATTGTTGGCAGTGAAGCTGCTTCATCATCCATTTCTTCCTTCTTCCAATCTGAATCATATACCTCAGCTTTGAAGTCTCGTGAAAACTCTGTGCTGGCGGATTCATTTCTAAAGCTTAGATGTGAGGTTTTGGGAGCCAATATTGTTAAGAGTGGTTCAGGAACTTTTGCAGTGTATTCTATTGCGGTGACTGATGCAAATGGTCAAAGTTGGTCTATCAAAAGAAGGTTTAGGCATTTTGAAGAGTTACATCGGCGTTTGAAGGAATTTCCTAAATATAATCTTAACTTACCACCAAAACATTTTCTTTCGTCAGGACTTGATGTACCTGTGGTTCAAGAAAGATGTAAAATGCTTAAGATATATCTGAAGGTTGAGAACGATGTGGGCTTGATCATGACTGTGAAACGAGGGGGGATGGCCATGGATGGGGAGGTAATTATGCTCAGTGAGGGGAGTGAGTGGTTGAGGGTAGCTATACATGGAGGAGTGGAGTGGTTTGAGAGAATTCGGCTCTCAACCTTCAAGAACTCATCTAATCTCTTGGCTCCCTCTTCACCGACTCAAGAACTCATCCAAGCTTCAAATGGAAAGCTATCAGCCCACCGCAATCAAGAATCGACCGCTCTATCAAGAAACTGCAGCCAAGAATCCTACAGCTGCTCTAGAAATCTATCAGCCATGATCAAGAAACCTGCCGCTGCTCTAGAAACATGCAGACGCTCTAGCTGTGATCAAGAAGATTTGTCATCAAGAACCGACGCCTTTAAAACGTCAAGAATCGACGATCAAGAATCGACCGCTGTTTTTCGTTGTTTTTCGCTATGCTCGTCCTCTCCGATGATCTCTCCTTTGAAGATGTAA

Network for GWHGAAEX000463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02194.14	PXA	107	282	4.10E-31
PF00787.23	PX	692	773	1.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0035091	Molecular Function	phosphatidylinositol binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.750
SRP064423	SRR2545915	Juvenile tuber	28.100
SRP108465	SRR5643513	five period of Gastrodia elata	14.500
	SRR5643514	five period of Gastrodia elata	13.260
	SRR5643515	five period of Gastrodia elata	13.520
	SRR5643524	five period of Gastrodia elata	13.990
	SRR5643525	five period of Gastrodia elata	11.690
	SRR5643528	five period of Gastrodia elata	10.250
	SRR5643658	five period of Gastrodia elata	16.000
	SRR5643659	five period of Gastrodia elata	12.310
	SRR5643660	five period of Gastrodia elata	14.450
	SRR5643661	five period of Gastrodia elata	11.200
	SRR5643662	five period of Gastrodia elata	9.940
	SRR5643663	five period of Gastrodia elata	10.500
	SRR5643664	five period of Gastrodia elata	12.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.770
SRP279888	Gastro	Gastrodia elata tuber	13.47
	Juven	Juvenile tuber	20.39
	Mother_Gastro	Mother tuber of Gastrodia elata	8.86
	Mother_Juven	Mother tuber of Juvenile	16.15