Gene detail

Detail information of GWHGAAEX000467/evm.TU.scaffold_1.180_evm.TU.scaffold_1.181

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|283780669\|ref\|YP_003371424.1\|	9.00E-122	transcriptional regulator [Pirellula staleyi DSM 6068]
nr	gi\|672123155\|ref\|XP_008784930.1\|	0	PREDICTED: uncharacterized protein LOC103703748 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0S6K9\|M0S6K9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P09680_001}
TAIR	AT5G66420	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	7997352	8056335	-

Transcript Sequence
>GWHTAAEX000467 CCGCCACCAAACTCCATTTTTTAGAGAAGCAACTCCGCCGAATCTCCTTTTTCTGTACAGCATTTCACTCGTCATTTTCCTCTGAAACTCTAAACCTAGCCATAAAACAATGAACGGAGAGCCAAAAGCACTTCAAGTTTTCTGTATCGGGACGGTTGACACCAAGTACCAGGAGCTACTCTTCCTTTCCGACCGCGTCCAATCCAATCTCGCAACCTTCACGAAGGGATATCCATTCAAGGTAGAGGTTACCCTAATAGATGTTTCTAGCTCGCCTCACAAGCGTAAAATAAAGCCTCCGGAGAATGTACATTTTCTTACTAGAGATAGTCTGCTTTACCACCATTTGAGTGTCGAAGAGAGGTTATCCTTCAAGCTTCCAAATGATAGAAGCGAAGCTATTGCTATCATAAGCAAGGCACTTAAAAGTTGCTTGAAAACATCCTACGAAGCTGCAATACTTGCTGGAGCTATAGGAATTGGTGGCAGTGGCGGAACTTCCTTAATTTCTCCAGCACTGAGAGTTTTGCCTCTTGGAATTCCTAAGCTCATTGTATCAACTGTAGCTAGCGGTCAAACGGAACCATATGTGGGAACATCTGATTTAGCTTTATTTCCGTCTGTCGTTGATGTCTGCGGGATCAATGAAGTCAGTAGAGTTATATTCTCAAATGCTGCAGCAGCTTTTGCAGGAATGATCATTGGAAGGCTGCTACAGTCTGATTTTTCTAGTGAAATTGTTAGAAAACCAATTGTGGGCATTACCATGTTTGGTGTGACTACTCCTTGTGTCACCGCTGTTAAAAGTAGATTGATTGAAGAAGGGTTCGAGCCAATGATATTTCATGCCACTGGCATTGGCGGCAAAGCTATGGAAAAGCTTGTCAGAGATGGCTTTATTCAGGGTGTTCTGGATATCACTACAACAGAAGTAGCTGATTTTATAGTTGGCGGTGTCATGCCTTGTGACAGTTCACGCTTTGATTCAATAATAGAGAAACGGGTTCCTCTTGTAGTTAGTGTTGGAGCCTTGGACATGGTGAACTTTGGAGAAAGATCTACAGTGCCTATTGACTTTGCTCAAAGAAATATTCATATTCATAATGAACAGGTTTCAGTGGTGCGAACTACAGTAGATGAAAACAGGAAATTTGCTGAGTTTATTGCTGCGAAAGTGAATCGGTTCTCTTCTAAAGTTTGTGTTTGCCTTCCAGAGCAAGGTATCTCTGCTCTGGATGCACCAGGGAAACCATTTTATGATCCTGAAGCTACACATGCTCTTTTAAATGATTTAGATCAACTTATAGAAAAAAATGAAAATCGACAGGTAAAAAGGCTTCCATATCATATTAATGACCCACAATTTGCTGATGCCTTGGTTGACTCATTCTTGGAAATGGGTGTGAAGTTTCCCCACAGTACAGTTTCTCAACAATCAGAAGTTTTAGAACTGCCACGTGCTAATGTAAATAAGGATGCATGCAACCAAGTTAAGGATGGCTCAAGCAACATAACTATTCTGCGATGCCCGTCCCAATTTCCTAATGCAAGGCGAGAAACTTTACTGAGGACTAGGACAATAGTAGAACAGCTGAAGCAACAGATAAATCAAGGTGTGCCCATTATTGGCGCAGGGGCCGGAACAGGAATATCTGCAAAATTTGAAGAAGTTGGAGGCGTGGATCTGATCGTAGTGTACAACTCTGGGCGATTCAGAATGGCAGGAAGAGGTTCTTTGGCAGGACTCTTACCTTTTGCCGATGCAAATGCAATAGTACTTGACTTGGCTAATGAAGTGTTACCTGTGGTAAAGCGAGTCCCTGTTCTTGCCGGAGTGTGTGCCACTGATCCATTTCGCAGGATGGAAGTTTTCCTGAAGCAGATCGAAGCATTGGGTTTCTCCGGGGTTCAGAATTACCCAACTGTTGGACTGTTTGACGGTAACTTTCGCCAGAATATAGAAGAAACAGGAATGGGCTTCGGATTGGAGGTTGAGATGATCAACGCAGCTCATGGATTGGGTCTGTTGACAACTCCATATGTTTTTAACGAAGAAGAAGCTAGCGCGATGGTGAAGGCTGGCGCCGATGTTATTGTTGCGCACATGGGTCTTACTACTGGAGGTTTGACTGGCGCAAAAACTGCTCTAACTCTTCAGGAATGCGTCGACCGCGTTCAAGCCATTGCGGATGCTGTGGCTGCCGTAAATCCCGGTGTTATTATTCTCTGCCACGGAGGTCCTATCTCTGGTCCAAGTGAAGTTGAGTATGTCCTCAAGAGCACCAAAGGAGTCCATGGATTTTACGGTGCATCCAGTTTGGAGAAGCTCCCTGTGGAAAACGCCATCATAAACACAGTGAAGCAGTTCAAATCTCTCTCTATAAAGTGAGAATAAATAAATTTATAAGTTAATATGCATATCTTGAATAAGTCCACGTTGTTTTACCAAAAAAGAGAAAAAATTTGTTTGGATCCATGTGATCAGGAGAACGTTAATCTCACTTCTTATGAGGCTAATAGGCATTATAAATAAAAGCATGACATTGAATGTTGTGAAACCTTAGATTGATCTTAATGAAATGCCTTCGGGAAATTTTTGTTTGTTAATATGAGAATGCTTCGCGGCTTAAATAAAGACCTAAATTATTTGAAAGTGGAGAAAAAACATACAATCATATCACTCTTTTTCCATCCAGTGGTCAAAAATTTTTGTCAATGTATTTTAGGTTTTTATTTGGGCATATTATAGC

Network for GWHGAAEX000467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06792.10	UPF0261	9	430	5.90E-150
PF09370.9	PEP_hydrolase	491	755	7.40E-128

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.550
SRP064423	SRR2545915	Juvenile tuber	55.400
SRP108465	SRR5643513	five period of Gastrodia elata	31.470
	SRR5643514	five period of Gastrodia elata	44.560
	SRR5643515	five period of Gastrodia elata	38.730
	SRR5643524	five period of Gastrodia elata	42.070
	SRR5643525	five period of Gastrodia elata	15.640
	SRR5643528	five period of Gastrodia elata	15.750
	SRR5643658	five period of Gastrodia elata	17.940
	SRR5643659	five period of Gastrodia elata	28.290
	SRR5643660	five period of Gastrodia elata	28.640
	SRR5643661	five period of Gastrodia elata	38.390
	SRR5643662	five period of Gastrodia elata	25.750
	SRR5643663	five period of Gastrodia elata	29.590
	SRR5643664	five period of Gastrodia elata	27.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.520
SRP279888	Gastro	Gastrodia elata tuber	34.67
	Juven	Juvenile tuber	29.14
	Mother_Gastro	Mother tuber of Gastrodia elata	16.08
	Mother_Juven	Mother tuber of Juvenile	14.53