Detail information of GWHGAAEX000473/evm.TU.scaffold_1.186
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1985 | 0 | Vesicle coat complex COPII, subunit SEC24/subunit SFB2 |
| nr | gi|743758065|ref|XP_010924896.1| | 0 | PREDICTED: protein transport protein Sec24-like At3g07100 [Elaeis guineensis] |
| Swissprot | tr|Q9SFU0|SC24A_ARATH | 0 | Protein transport protein Sec24-like At3g07100 |
| trEMBL | tr|M0RYT3|M0RYT3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P10740_001} |
| TAIR | AT3G07100 | 0 | Sec23/Sec24 protein transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 8385351 | 8420505 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000473
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 363 | 401 | 1.20E-17 |
| PF04811.14 | Sec23_trunk | 438 | 674 | 1.80E-80 |
| PF08033.11 | Sec23_BS | 680 | 764 | 1.90E-19 |
| PF04815.14 | Sec23_helical | 775 | 878 | 1.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14007 | SEC24 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.000 |
| SRR2545915 | Juvenile tuber | 43.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.150 |
| SRR5643514 | five period of Gastrodia elata | 33.350 | |
| SRR5643515 | five period of Gastrodia elata | 30.940 | |
| SRR5643524 | five period of Gastrodia elata | 34.420 | |
| SRR5643525 | five period of Gastrodia elata | 22.590 | |
| SRR5643528 | five period of Gastrodia elata | 25.170 | |
| SRR5643658 | five period of Gastrodia elata | 27.490 | |
| SRR5643659 | five period of Gastrodia elata | 36.040 | |
| SRR5643660 | five period of Gastrodia elata | 37.620 | |
| SRR5643661 | five period of Gastrodia elata | 34.580 | |
| SRR5643662 | five period of Gastrodia elata | 31.540 | |
| SRR5643663 | five period of Gastrodia elata | 34.890 | |
| SRR5643664 | five period of Gastrodia elata | 34.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 66.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 72.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.28 |
| Juven | Juvenile tuber | 54.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.20 | |
| Mother_Juven | Mother tuber of Juvenile | 51.65 |