Gene detail

Detail information of GWHGAAEX000474/evm.TU.scaffold_1.188

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1303	Amino acid transporters
nr	gi\|573938379\|ref\|XP_006651630.1\|	PREDICTED: proline transporter 1-like [Oryza brachyantha]
Swissprot	tr\|Q69LA1\|PROT2_ORYSJ	Probable proline transporter 2
trEMBL	tr\|J3LR42\|J3LR42_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G35180.1}
TAIR	AT3G55740	proline transporter 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	8662924	8707389	+

Transcript Sequence
>GWHTAAEX000474 TAATTTTTCTCATTCTTAAATTTTTCACATATATATTTATGTTCGTTTGTGATTGTTTGTGATTCTCTACAAACAGCCCTTAACTTTAAGCATTTTAAATTATGAAAACTTCTCACACGCTCTCCTGCTTTCTTTTAGTGAATAGCGTATATAGATGAGATTCTCTCTTTCTCTCGGAGAGTTCCAACTTTCTCCGTTATTTATTTCCTTCACCATCTCTTCCTCCTTCTCGTTCTCTCCTTCTTCATCGAGAAGAAGAGGAAGGGTTATATTTCCAAGATGGCTCTATCGCTGGAGGTCGAGCAAGATGAACATCAGGTTAAAGAGAAGTTTTCAACAGAAGACACTGCCCACCAAATCAGCACTGATCCATGGTATCAAGCTGGATTTGTTCTTACAACTGGAATAAACAGTTCTTATGTGCTAGGATATTCAAGATCAATAATGGTTCCTTTGGGATGGGTTGGTGGAGTGGTTGGCTTAATTTTAGCAGCTCTTGTATCCTTATCTGCCAATCTCCTTATTGCCTATTTGCATGAAGTTGGAGGCAAAAGGAGAATCAGATACAGAGACCTTGCATATTACATATACGGAAGGAAAATGTATTATGTTACATGGGCCCTCCAATATGTGAATCTATTCATGATCAATACCGGCTTTATCATTTTGGCTGGGCAAGCATTAAAGGCTATTTATGTTCTATACCGAAATGATGATGCATTGAAGCTTCCACACTGTATAGCAATTTCAGGATTTGTTTGTGCCCTTTTTGCATTTGGAATACCTCATCTATCTGCATTAAGGATATGGTTGGGATTGTCTACACTCTTTGGCCTTATATATATTGTTATAGCAATTGCACTTTCGCTTAAGGATGGAATAAACAGTCCGGCGAGAGATTATAGCTTTACAACATCCCATTGGAACAAGGTTTTTTCCATCATTGGTGCAACTGCTAATCTAGTTTTTGCATACAATACTGGAATGCTGCCAGAAATACAGGCAACAGTTAAAGAGCCTGCCATAAAAAACATGGAGAAAGCGTTATGGTTTCAATTCTTAGTTGGTGGTTTGCCTCTGTATGCTGTTACATTCTTGGGTTATTGGGCCTATGGTTCATCAACTTCGGCTTATCTTCTCAACAATGTACATGGCCCGGCTTGGGTTAAGACACTTGCCAATGTTTCAGCCTTTCTCCAGACAGTTATTGCCTTGCATATTTTTGCAAGTCCAATGTATGAGTATCTGGACACAAAGTGGGGGAGAGGAGCTGGGAAGCCCTTTGCCTTGCAAAATTTGTTGTTCCGAGTTTTGGTAAGAGGAGGGTATCTCACCATAAACACATTTGTCTCTGCTCTCCTTCCATTCCTCGGAGACTTTATGAGCTTAACTGGGGCTTTGAGCACATTCCCGCTCACATTTGTTCTTGCAAATCACATGTATTTGATGGCAACTAAGCTTTCAGTTCCTCAGAAAGCATGGCATTGGTTAAATGTTGTAGGCTTCGGCGGTTTGGCTATAATTGCTGCCATTGCTGCCCTAAGACTCATCATTGTAGATTCTAAAACTTACGATCTTTTTGCTGATATTTGAAATCCATTGTTTACATTATAACATGCACTTAAAATTCTATAGCATTTCCTGTCTTAGCAGAGTTGTATACAAAAAGAAACCGTATGCTGTGTTTTGTTATTTGAACTGTAATAGAAAATGCTTGACAATTTTATTATTGTTTGTTTTATTCTGTTAAGTATGCTTTCCAATTCTGAAAAGTGTCTTTGAATTTTTCAAAATTTCATAGGCAATTCTTGATGGATAACTATGGCATGTAGACCTGATTAGTAGTTTAAAGATTTGAGTTAAAGAACCCATCAAGTTGCTTGAAGACACCATAAAGAGATTATGGGAAACTAAAGAAACTATGCTTGAGAGCTCATTGGATTGCTTCTACGATGCACGGATTATACGGGCATAGCTCATCTTTATTACTGATAAATATAGGACATGAACATACTTGGGACATCGCTTGAATATGTGATTAAATATACAGTATAATGCAGTATATGTATATCTATATCTACTTATGAGGTATAGAGTTATTTTGCTATATTTTTAGAATGTGATGACTTATTTTGATTTGTAATTGGTTGAGCCTCTCAGTGCTCTTGGCTACACTTGGCTACACTTAAAATACTTGGTTATTAAAGACACTTTGGGGT

Network for GWHGAAEX000474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	31	420	2.80E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.240
SRP064423	SRR2545915	Juvenile tuber	11.960
SRP108465	SRR5643513	five period of Gastrodia elata	24.510
	SRR5643514	five period of Gastrodia elata	27.490
	SRR5643515	five period of Gastrodia elata	30.380
	SRR5643524	five period of Gastrodia elata	41.120
	SRR5643525	five period of Gastrodia elata	15.860
	SRR5643528	five period of Gastrodia elata	11.420
	SRR5643658	five period of Gastrodia elata	7.000
	SRR5643659	five period of Gastrodia elata	9.540
	SRR5643660	five period of Gastrodia elata	6.340
	SRR5643661	five period of Gastrodia elata	12.730
	SRR5643662	five period of Gastrodia elata	2.240
	SRR5643663	five period of Gastrodia elata	2.320
	SRR5643664	five period of Gastrodia elata	1.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.640
SRP279888	Gastro	Gastrodia elata tuber	3.17
	Juven	Juvenile tuber	5.05
	Mother_Gastro	Mother tuber of Gastrodia elata	87.16
	Mother_Juven	Mother tuber of Juvenile	53.35