Detail information of GWHGAAEX000476/evm.TU.scaffold_1.192


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16098.00E-66Protein involved in mRNA turnover and stability
nrgi|743762012|ref|XP_010905985.1|6.23E-100PREDICTED: uncharacterized protein LOC105033039 [Elaeis guineensis]
trEMBLtr|M0S3M7|M0S3M7_MUSAM1.00E-78Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P27700_001}
TAIRAT5G058308.00E-66RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000888055858827030+
Transcript Sequence

Network for GWHGAAEX000476

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv1011524.80E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.010
SRR2545915Juvenile tuber31.740
SRP108465SRR5643513five period of Gastrodia elata25.500
SRR5643514five period of Gastrodia elata26.310
SRR5643515five period of Gastrodia elata22.600
SRR5643524five period of Gastrodia elata24.070
SRR5643525five period of Gastrodia elata34.720
SRR5643528five period of Gastrodia elata21.470
SRR5643658five period of Gastrodia elata35.310
SRR5643659five period of Gastrodia elata28.950
SRR5643660five period of Gastrodia elata30.300
SRR5643661five period of Gastrodia elata26.490
SRR5643662five period of Gastrodia elata30.980
SRR5643663five period of Gastrodia elata32.810
SRR5643664five period of Gastrodia elata31.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.800
SRR6049655Rhizomagastrodiae_C368-T10_good_122.620
SRR6049656Rhizomagastrodiae_C368-T07_good_123.070
SRR6049657Rhizomagastrodiae_C368-T07_good_119.660
SRR6049658Rhizomagastrodiae_C368-T04_good_117.910
SRR6049659Rhizomagastrodiae_C368-T04_good_116.520
SRR6049660Rhizomagastrodiae_C368-T01_good_122.350
SRR6049661Rhizomagastrodiae_C368-T04_good_119.030
SRR6049662Rhizomagastrodiae_C368-T01_good_126.280
SRR6049663Rhizomagastrodiae_C368-T01_good_121.690
SRR6049664Rhizomagastrodiae_C368-T10_good_124.050
SRR6049665Rhizomagastrodiae_C368-T10_good_124.050
SRP279888GastroGastrodia elata tuber 34.02
JuvenJuvenile tuber20.67
Mother_GastroMother tuber of Gastrodia elata 10.40
Mother_JuvenMother tuber of Juvenile 8.73