Detail information of GWHGAAEX000481/evm.TU.scaffold_1.200
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672161565|ref|XP_008800604.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9SZ10|PP338_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g26680, mitochondrial (Precursor) |
| trEMBL | tr|A0A061DU07|A0A061DU07_THECC | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:EOX93483.1} |
| TAIR | AT4G26680 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9087707 | 9089221 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000481
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 145 | 187 | 0.0098 |
| PF13041.5 | PPR_2 | 212 | 261 | 9.20E-13 |
| PF13041.5 | PPR_2 | 282 | 330 | 9.90E-20 |
| PF12854.6 | PPR_1 | 348 | 380 | 1.90E-11 |
| PF13041.5 | PPR_2 | 388 | 435 | 1.10E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.830 |
| SRR2545915 | Juvenile tuber | 1.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.030 |
| SRR5643514 | five period of Gastrodia elata | 0.570 | |
| SRR5643515 | five period of Gastrodia elata | 0.910 | |
| SRR5643524 | five period of Gastrodia elata | 0.540 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.160 | |
| SRR5643658 | five period of Gastrodia elata | 0.210 | |
| SRR5643659 | five period of Gastrodia elata | 1.240 | |
| SRR5643660 | five period of Gastrodia elata | 1.640 | |
| SRR5643661 | five period of Gastrodia elata | 1.960 | |
| SRR5643662 | five period of Gastrodia elata | 1.740 | |
| SRR5643663 | five period of Gastrodia elata | 1.070 | |
| SRR5643664 | five period of Gastrodia elata | 1.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.60 |
| Juven | Juvenile tuber | 1.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.87 | |
| Mother_Juven | Mother tuber of Juvenile | 4.50 |