Detail information of GWHGAAEX000486/evm.TU.scaffold_1.205
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392409624|ref|YP_006446231.1| | 2.00E-11 | SSU ribosomal protein S6P [Desulfomonile tiedjei DSM 6799] |
| nr | gi|661884269|emb|CDP12186.1| | 4.09E-65 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|Q8VY91|RR6_ARATH | 7.00E-65 | 30S ribosomal protein S6 alpha, chloroplastic (Precursor) |
| trEMBL | tr|A0A068UUY8|A0A068UUY8_COFCA | 2.00E-65 | Coffea canephora |
| TAIR | AT1G64510 | 2.00E-64 | Translation elongation factor EF1B/ribosomal protein S6 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9270858 | 9271882 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000486
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01250.16 | Ribosomal_S6 | 93 | 191 | 3.30E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02990 | RP-S6, MRPS6, rpsF | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0019843 | Molecular Function | rRNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.180 |
| SRR2545915 | Juvenile tuber | 12.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.360 |
| SRR5643514 | five period of Gastrodia elata | 30.140 | |
| SRR5643515 | five period of Gastrodia elata | 29.460 | |
| SRR5643524 | five period of Gastrodia elata | 28.370 | |
| SRR5643525 | five period of Gastrodia elata | 28.000 | |
| SRR5643528 | five period of Gastrodia elata | 32.950 | |
| SRR5643658 | five period of Gastrodia elata | 29.070 | |
| SRR5643659 | five period of Gastrodia elata | 27.310 | |
| SRR5643660 | five period of Gastrodia elata | 29.880 | |
| SRR5643661 | five period of Gastrodia elata | 30.340 | |
| SRR5643662 | five period of Gastrodia elata | 41.100 | |
| SRR5643663 | five period of Gastrodia elata | 36.670 | |
| SRR5643664 | five period of Gastrodia elata | 37.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.07 |
| Juven | Juvenile tuber | 22.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.98 | |
| Mother_Juven | Mother tuber of Juvenile | 14.67 |