Detail information of GWHGAAEX000487/evm.TU.scaffold_1.206
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383762699|ref|YP_005441681.1| | 1.00E-09 | 30S ribosomal protein S18 [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| KOG | KOG3162 | 3.00E-47 | Mitochondrial/chloroplast ribosomal protein S18 |
| nr | gi|672194862|ref|XP_008776397.1| | 9.44E-102 | PREDICTED: uncharacterized protein LOC103696517 [Phoenix dactylifera] |
| Swissprot | tr|P49505|RR18_ODOSI | 2.00E-08 | 30S ribosomal protein S18, chloroplastic |
| trEMBL | tr|M0U6U1|M0U6U1_MUSAM | 8.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06300_001} |
| TAIR | AT1G07210 | 3.00E-47 | Ribosomal protein S18 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9304704 | 9331119 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000487
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01084.19 | Ribosomal_S18 | 177 | 225 | 9.60E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.790 |
| SRR2545915 | Juvenile tuber | 21.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.210 |
| SRR5643514 | five period of Gastrodia elata | 26.940 | |
| SRR5643515 | five period of Gastrodia elata | 23.180 | |
| SRR5643524 | five period of Gastrodia elata | 23.720 | |
| SRR5643525 | five period of Gastrodia elata | 13.540 | |
| SRR5643528 | five period of Gastrodia elata | 10.870 | |
| SRR5643658 | five period of Gastrodia elata | 11.140 | |
| SRR5643659 | five period of Gastrodia elata | 31.710 | |
| SRR5643660 | five period of Gastrodia elata | 32.720 | |
| SRR5643661 | five period of Gastrodia elata | 34.500 | |
| SRR5643662 | five period of Gastrodia elata | 30.830 | |
| SRR5643663 | five period of Gastrodia elata | 28.090 | |
| SRR5643664 | five period of Gastrodia elata | 28.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.70 |
| Juven | Juvenile tuber | 20.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.34 | |
| Mother_Juven | Mother tuber of Juvenile | 14.17 |