Detail information of GWHGAAEX000488/evm.TU.scaffold_1.208
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 3.00E-12 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|720080954|ref|XP_010242129.1| | 0 | PREDICTED: U-box domain-containing protein 17 [Nelumbo nucifera] |
| Swissprot | tr|Q9C7R6|PUB17_ARATH | 0 | U-box domain-containing protein 17 |
| trEMBL | tr|I1M1P9|I1M1P9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29780.1} |
| TAIR | AT1G29340 | 0 | plant U-box 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9450223 | 9452841 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000488
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 283 | 353 | 3.60E-19 |
| PF00514.22 | Arm | 417 | 455 | 6.90E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.920 |
| SRR2545915 | Juvenile tuber | 21.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.800 |
| SRR5643514 | five period of Gastrodia elata | 8.710 | |
| SRR5643515 | five period of Gastrodia elata | 16.290 | |
| SRR5643524 | five period of Gastrodia elata | 10.420 | |
| SRR5643525 | five period of Gastrodia elata | 27.030 | |
| SRR5643528 | five period of Gastrodia elata | 39.220 | |
| SRR5643658 | five period of Gastrodia elata | 30.760 | |
| SRR5643659 | five period of Gastrodia elata | 18.890 | |
| SRR5643660 | five period of Gastrodia elata | 12.020 | |
| SRR5643661 | five period of Gastrodia elata | 17.830 | |
| SRR5643662 | five period of Gastrodia elata | 24.020 | |
| SRR5643663 | five period of Gastrodia elata | 15.680 | |
| SRR5643664 | five period of Gastrodia elata | 35.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.28 |
| Juven | Juvenile tuber | 9.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.22 | |
| Mother_Juven | Mother tuber of Juvenile | 25.21 |