Detail information of GWHGAAEX000489/evm.TU.scaffold_1.209
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|206895302|ref|YP_002246820.1| | 8.00E-53 | DNA polymerase III subunit gamma and tau [Coprothermobacter proteolyticus DSM 5265] |
| KOG | KOG0989 | 0 | Replication factor C, subunit RFC4 |
| nr | gi|743756422|ref|XP_010916718.1| | 0 | PREDICTED: protein STICHEL-like 3 [Elaeis guineensis] |
| Swissprot | tr|F4JRP0|STIL3_ARATH | 0 | Protein STICHEL-like 3 |
| trEMBL | tr|F6HMC0|F6HMC0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55708.1} |
| TAIR | AT4G18820 | 0 | AAA-type ATPase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9499276 | 9601987 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000489
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13177.5 | DNA_pol3_delta2 | 451 | 608 | 1.60E-20 |
| PF12169.7 | DNA_pol3_gamma3 | 664 | 723 | 4.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0009360 | Cellular Component | DNA polymerase III complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.260 |
| SRR2545915 | Juvenile tuber | 9.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.290 |
| SRR5643514 | five period of Gastrodia elata | 6.120 | |
| SRR5643515 | five period of Gastrodia elata | 5.700 | |
| SRR5643524 | five period of Gastrodia elata | 6.370 | |
| SRR5643525 | five period of Gastrodia elata | 2.740 | |
| SRR5643528 | five period of Gastrodia elata | 1.730 | |
| SRR5643658 | five period of Gastrodia elata | 2.380 | |
| SRR5643659 | five period of Gastrodia elata | 6.770 | |
| SRR5643660 | five period of Gastrodia elata | 6.130 | |
| SRR5643661 | five period of Gastrodia elata | 6.090 | |
| SRR5643662 | five period of Gastrodia elata | 5.150 | |
| SRR5643663 | five period of Gastrodia elata | 5.980 | |
| SRR5643664 | five period of Gastrodia elata | 4.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.44 |
| Juven | Juvenile tuber | 9.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.76 | |
| Mother_Juven | Mother tuber of Juvenile | 4.62 |