Gene detail

Detail information of GWHGAAEX000490/evm.TU.scaffold_1.210

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672132880\|ref\|XP_008790032.1\|	2.73E-104	PREDICTED: uncharacterized protein LOC103707359 [Phoenix dactylifera]
trEMBL	tr\|A0A077RUL4\|A0A077RUL4_WHEAT	3.00E-87	Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313\|EMBL:CDM82074.1}
TAIR	AT1G53380	6.00E-76	Plant protein of unknown function (DUF641)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	9610986	9612587	-

Transcript Sequence
>GWHTAAEX000490 CTCGAACAAAAAACAGCAGGATCTATTATGGAGAAACGCTATTACGGAGAAACGCGTTCCTGTAATTACTGTACATGCGTTACATTGAGTTTATATGTGCAATCATAGCCTCTAATTTTCATTCTATAAAAGAAAGAACCTTCCATATATTTTTCACTTTAATTTAAGTAATTATTTACTTCAAAGTTGAGGACAGTTGGAATCCTTCTTGCTCATCCTGGCGCCACATTAATCCATTGTATCTTCTTCCCCCTTCCACAGCAGCCCTGAAGCCCAGCAGCAATGGAAACTGCGAACGCCGCCCTGATTAAGACGGTCAAGAAGATCTTTCGATCCCGCCGTCAATGCCCTGATAAGAACAATCCAGCGTCGGAAGAATCATCGGGCAGCAGAAATGAGCCAGAGATTGATTCTCTCCTTGCCGAGATCTTCGCATGCGTTTCCGCCATTAAAACGGCCTACGCTCAGCTCCAGATCGCTGAATCGCCCTACAATCCAGAGGCCATTCAGGCCTCCGATCAAGCCATCGTATCCGAGCTCAGACGCGCCTCCGCCCTTAAGCAAAATTTTCTCTGCGAGAAGCGGAGAAATGTCCTCAGAGGCTATGAAATCACAGCCCGTAAGCTGGAATCCAGCCTCCAGAGCAAGGATGACCAGATCCAATTCCTCAGGCTGCAGCTCCATGACTCTCTTGACGATCTCAGCCCGTCCTTGCCTGATCCAAGGCACTTCGTTGCGACGCTGCGCTTGGCCGTGAAATCGATCAGGCATTTCGTCAAGCAGATGATTCGCGAGATGGAATACGCGGGATGGGATCTGGACACCGCTGCTGCAGCCATTGAGCCGGCTGTCAGGGGTAGGTCGGAGCACCGGATTCACGCCTTCGAATCCTTCGCCGGCCTGCGAGTTTTTTCCGGTTTCCAATGCCGCGATTTCGGCATCGCTGACGAAGGGCAACTATTGCGGGATCGCCGGAGATTCTTTAAGGAGTTCGTGGAGCTGGGGGAGGCAGGATCGACGCCGGGACTCAGAGAGTTCATCAGAACGAAGTATCTCTCTTTGGTGCATCCGAAGATGGAGGCGTCCTTCTTCGGAGGCAGGGGTTTTCCGCAGGCGTCGGAGTTCTTTGCATTGTTCGCAGAAATGGCGAAGAGGATCTGGATTCTTCATCGCCTGTATTTCTCCTACGGAGAGGAGGGGGAGGGAGCAGAAATTTTTCAGGTGCGGAGAGGCTGCCGATTTTCGGAGGTTTATATGGAGAGCGTCGCCGTCCGGCCGGCACATTTTCCGTTCAGTTCGCCGGCGGGTCTCACTGTGGCCTTCACGGTGCTGCCGGGCTTCAGGGTGGGGAAAGCTTTGATTCCGTGCAAGGTCTACCTATCCCAAGCGGGGAAGAAAGGCAGATGAGCCTTCTCGATTTGATGCTTCAAATTATTATGATAAATCTCTAAAAAATTAGCAAAATATTTTATATTTATGATTAATAAAAGATTTTTATTATTTATTTATAGATGAGCTGCCACATTTTTGTATTGTATTTATTTTATTATAACTTGGCTTTTTTACTTAAGCTGTATTTAGCTATATTTATTTATTTTTAAG

Network for GWHGAAEX000490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04859.11	DUF641	41	136	1.10E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.070
SRP064423	SRR2545915	Juvenile tuber	8.940
SRP108465	SRR5643513	five period of Gastrodia elata	4.770
	SRR5643514	five period of Gastrodia elata	2.990
	SRR5643515	five period of Gastrodia elata	5.020
	SRR5643524	five period of Gastrodia elata	1.680
	SRR5643525	five period of Gastrodia elata	9.900
	SRR5643528	five period of Gastrodia elata	5.890
	SRR5643658	five period of Gastrodia elata	5.130
	SRR5643659	five period of Gastrodia elata	12.040
	SRR5643660	five period of Gastrodia elata	10.080
	SRR5643661	five period of Gastrodia elata	12.840
	SRR5643662	five period of Gastrodia elata	12.690
	SRR5643663	five period of Gastrodia elata	16.500
	SRR5643664	five period of Gastrodia elata	23.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.330
SRP279888	Gastro	Gastrodia elata tuber	4.69
	Juven	Juvenile tuber	0.63
	Mother_Gastro	Mother tuber of Gastrodia elata	0.98
	Mother_Juven	Mother tuber of Juvenile	0.54