Detail information of GWHGAAEX000492/evm.TU.scaffold_1.212
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470183469|ref|YP_007569344.1| | 7.00E-06 | Sugar symporter [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG0254 | 3.00E-30 | Predicted transporter (major facilitator superfamily) |
| nr | gi|567857820|ref|XP_006421593.1| | 1.93E-37 | hypothetical protein CICLE_v10006670mg [Citrus clementina] |
| Swissprot | tr|P23586|STP1_ARATH | 9.00E-31 | Sugar transport protein 1 |
| trEMBL | tr|V4RKY8|V4RKY8_9ROSI | 7.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:ESR34833.1} |
| TAIR | AT1G11260 | 3.00E-30 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 9629291 | 9640755 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000492
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 4 | 107 | 1.30E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.790 |
| SRR2545915 | Juvenile tuber | 5.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.120 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.270 | |
| SRR5643663 | five period of Gastrodia elata | 0.310 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.97 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.80 | |
| Mother_Juven | Mother tuber of Juvenile | 0.06 |