Gene detail

Detail information of GWHGAAEX000493/evm.TU.scaffold_1.213

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337285964\|ref\|YP_004625437.1\|	2.00E-128	alpha,alpha-trehalose-phosphate synthase [Thermodesulfatator indicus DSM 15286]
KOG	KOG1050	0	Trehalose-6-phosphate synthase component TPS1 and related subunits
nr	gi\|672192858\|ref\|XP_008775883.1\|	0	PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Phoenix dactylifera]
Swissprot	tr\|Q9LMI0\|TPS7_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
trEMBL	tr\|B9S8D6\|B9S8D6_RICCO	0	Trehalose-6-phosphate synthase, putative {ECO:0000313\|EMBL:EEF40113.1}
TAIR	AT1G06410	0	trehalose-phosphatase/synthase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	9693971	9699616	+

Transcript Sequence
>GWHTAAEX000493 TCCTATCGGTTACAATTAACGATTAAGATTTAATTATAACATACAATAAATAAGTAGCAATTAAATCCACATATCTGTTGCGCAGCGCTTCCTCCTACTTTCCAGTTTCCTCCTTCGGCTTAGGTTTCCTCGTGCTCACAGCGATCTCATACGCCGACGCGCCCGCTGACTATATTTCCTCTTCTTCGCTTTGAACGCGCGCGCCTTCTCCCTCTCCTTCCCTGCGATCGGAATTCTTCCTCGAGTTCCTCCGCCGAAAACTGAGACAAGGTACGCACGTCCTTGTTCGGAAGAAGGAAGCCTTTGCTCGAGATCTTTGTGGTTGTTTTATTTGATGCCGCAGATCCTCTTCGATTTGGCAAGATGATGTCGAGATCGTACACTAACCTCTTGGATCTTGCGTCCGGGAACTTTCCCTCATTTGCTGGTGGGGGTTCGGGCATGGGGAGACAGCTTCCAAGGGTTATGACGGTCCCCTTACCCCTTACAGAGCTCGAGGACGACGAACGGGCCAACAGCGTATCCTCGGATGTCCCTTCCTCTCTCGCGCAAGACCGAATCATCATAGTGGCTAATCAGCTCCCTTTGCGTGCCAAGCGCCGCCCCGATGGCCGCGGATGGAGCTTTTCATGGGATGAGAGTTCCCTCCTGCTCCAACTTAAGGATGGCTTACCCGAAGATATGGAGGTCATTTATGTCGGTTCCCTTCGCGCCGAAGTAGAGAGCCACGAGCAGGACGACGTTTCCCAAACCCTCCTCGAGCGCTTCAAATGCGTACCGGCTTTTCTCGAGACCGACCTTTTGGATCGCTTTTACCATGGATTCTGCAAGCAGCAGCTCTGGCCGCTGTTCCACTACATGCTCCCCTTCTCCGCAGAGCATGGCGGCCGCTTCGATCGATCTCTCTGGGAGGCTTACGTTCTCGCGAACAGGCTGTTCTCGCAGAAAGTCATCGAGGTTATTAATCCTGAGGAGGACTATGTTTGGATTCACGACTACCATCTTATGGCCCTTCCCACCTTCCTCCGTCGCCGCTTCAATCGATTGCGGATGGGTTTTTTCCTACATAGCCCGTTCCCGTCATCGGAGATCTATCGTACCTTGCCGGTGCGAGAAGAGATCCTGAAGGCCCTTCTCAATTGCGATCTGGTTGGCTTCCACACCTTCGACTATGCTCGCCATTTTCTGTCCTGCTGCAGCCGGATGCTGGGCATTGAGTACCAATCCAAGCGTGGCTATATAGGACTCGACTACTTTGGCCGCACCGTGGGGGTAAAAATTATGCCCGTTGGTATTCACATGGACCAACTGCAGTCGGCCATTTCCTTGCCGGATAAGGGCCGATGCATCTCACTACTCCAACAGCAGTTCACAGGTAAGACCGTTCTTCTTGGTGTTGATGACATGGACATTTTTAAAGGTATCAATCTCAAGCTTCTGGCTTTCGAACAAATGCTGAAGATGCATCCCAAGTGGCAGGGAGATGCTGTTCTTGTGCAGATTGTCAATCCTGCGAGGGGCAGGGGAAGGGATCTTGAAGAGATCCAGGTTGAGATTCAGCAGAGCTGCAGGAGGATTAATCAGCAGTTTGGGAATGAGAATTACAGACCTGTTGTCTTCATTGATCGGCAGGTATCAATTGAGGAAAGAATTGCCTACTATACTATAGCAGATTGTGTTGTTGTGACAGCAGTCAGGGATGGGATGAACCTTACACCATATGAATATATTGTCAGCAGGCAGGGAATTGCTTCTGGATCAGATTCTAGCTCTGGACGAGACGGTCCTAAGAAAAGCATGCTTGTCGTGTCTGAATTCATTGGGTGCTCCCCTTCTCTGAGTGGCGCAATTCGGATTAACCCATGGAACACAGAGTCAACGGCGGAGGCAATGAATGAAGCGATCTCAATGAATGATGCGGAGAAGCAAGTTCGGCATGAGAAGCATTACAGTTATGTTAGCACCCATGATGTTGCTTACTGGTCCAGATCCTTTATGTTTGACTTGGAGCGTACATGCAAGGACCACTTCAAGAAAAGATGTTGGGGAAGTGGTTTAGGATTTGGGTTCAAGGTTGTTGCACTTGACCCTAACTTCAGGAAGCTCAACATTGATGCAATTGTTGCTGCCTACCAGAGGTCCAAGAGTCGTGCTATTTTGTTGGATTATGATGGCACACTCATCCCACCTATGGCAATTAACAAGACCCCAAGTGCAGAAATTATCTCCATTCTTAAAACACTTTGTGGGGATAAAAAGAATGTGGTATTTATGGTCAGTGGTAGGGGTAAGGATTGCTTAGGGAAGTGGTTTTCTCCTTGCAGAAAGCTTGGGATTGCTGCAGAGCATGGCTACTTCATGAGGTGGAATCGTGACGAGGAATGGGAGGAATGCGGCCAGAGTTCAGATTTTGAATGGATGGAAATGGCCGAGCCAGTGATGAAACTGTACGCAGAGTCGACTGATGGCTCCTATATCGAAAAGAAAGAGAGTGCTCTTGTGTGGCACCATCAGGATGCCGATCCCGATTTTGGTTCCGCACAGGCCAAGGAAATGCTTGACCACCTGGAGAGCGTTCTCGCGAACGAGCCAGTGCTAGTGAAGAGCGGTCAGCTCATCGTCGAAGTCAAACTTCAGGGTGCGAGCAAAGGCATTGTTGTGGAGAAGATCTTGTCCTCCATGGTTGGAAAGAGCAGGCCGGCGGATTTCGTGCTGTGCATTGGGGACGACAGGTCGGACGAGGACATGTTTGAATGCATCAGCAACTCGCTCTCAAGGGACCTCGTCGTGCCCGCCGCGTCGGTGTTCGCCTGCACGGTCGGGCAGAAGCCCAGCAACGCGAAATACTTTCTCGACGACACGGCCGGAGTCACAAATATGCTCGGCGCCCTCGCGGATGTCGCCGAGCCGTCGTCCCCGCCTCTGTCCGTGGCCCAGCTCTCCGCATGAAACAGCCGCCGCCGCCGCCGCCGCCGAAGGCTCGATCAATTTTGCATGATTGTTTTATATATTATGGTTATTTATGTTTTTTTGGCTGTGAATAGGTGAAGAAGAAGACTGATGATGCAGAAAGAGGGAGAATGTTCTATTTATTTATATATATATTTCATTTGTTTGCCAAAGTAGTTGTGTAGCCTCTGTAGGTAGAGAGAACGCACGCCTCTTGAGCGCGTAAATCATATTCTCTTAACTTTTTTTTGTTGCCAAACGGTTGTGGCCTCTCTGGTCATTTATTATTTTTTCTATACTGCCTTTCAAATAATATATAAACCCTCCCCATTTTGTTTTATTGGAAAACTCATTCCTTGGAATATATATATATATATATAT

Network for GWHGAAEX000493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.20	Glyco_transf_20	65	549	5.20E-178
PF02358.15	Trehalose_PPase	599	833	2.40E-73

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.340
SRP064423	SRR2545915	Juvenile tuber	42.980
SRP108465	SRR5643513	five period of Gastrodia elata	38.800
	SRR5643514	five period of Gastrodia elata	27.490
	SRR5643515	five period of Gastrodia elata	61.110
	SRR5643524	five period of Gastrodia elata	30.640
	SRR5643525	five period of Gastrodia elata	52.240
	SRR5643528	five period of Gastrodia elata	97.980
	SRR5643658	five period of Gastrodia elata	40.400
	SRR5643659	five period of Gastrodia elata	100.860
	SRR5643660	five period of Gastrodia elata	85.020
	SRR5643661	five period of Gastrodia elata	104.540
	SRR5643662	five period of Gastrodia elata	121.620
	SRR5643663	five period of Gastrodia elata	87.630
	SRR5643664	five period of Gastrodia elata	180.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	75.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	93.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	77.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.040
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.040
SRP279888	Gastro	Gastrodia elata tuber	54.55
	Juven	Juvenile tuber	28.34
	Mother_Gastro	Mother tuber of Gastrodia elata	63.71
	Mother_Juven	Mother tuber of Juvenile	69.87