Gene detail

Detail information of GWHGAAEX000494/evm.TU.scaffold_1.216_evm.TU.scaffold_1.215

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	1.00E-33	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|590610846\|ref\|XP_007021935.1\|	0	Leucine-rich repeat transmembrane protein kinase [Theobroma cacao]
Swissprot	tr\|C0LGN2\|Y3148_ARATH	0	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (Precursor)
trEMBL	tr\|A0A061F7X4\|A0A061F7X4_THECC	0	Leucine-rich repeat transmembrane protein kinase {ECO:0000313\|EMBL:EOY13460.1}
TAIR	AT3G14840	0	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	9792918	9845062	-

Transcript Sequence
>GWHTAAEX000494 TTCGATCACAAGTCTTCGATTAAGGCAGTCTAAGTTGTGCTTGCATCTGCGGTCAACATCTCCTATTCTGGCTTCTCGGATTTCTCAGAGAGTTTCCGAAGGGAGAGCCTCATACAACTCGCTTGGAATCACTCGAAAGTGGAGATGCTCCTAGCAAAACTGCTTTTTTCTCTCCTATCGATCCCTCCGTTGCTTCCAGCAGCATTGTCTCTATCCACTCCCCTGCCTCCGGAAGAGATTGAAGCCCTTAGACTCATCGCCAAGGCATTGAAGAAAACAAATTGGAACTTCAGTGTAGATCCGTGCAGTCAAGAAGGTAGCTGGGTAACTCACAATGCTCCGAATGGGTTTGAGAACAGTGTCTGGTGCAATAATTGCACTGCTGACGGAAGAGTCTGCCATGTGACAAGCATTGTGTTGAAGTCCCAAAATCTTGTGGGGACCCTTCCGCATGAAATGGCCTTACTTCCATTCCTCCAAGAAATTGATCTCACCCGCAACTTCCTTAATGGTACAATACCAGATGATTGGGCAGTTCTTCCTCTAGTGAATGTTTCTCTTCTTGGAAATAGTATTTCAGGGCAAGTTCCATCATGGATTGGAAACATAACAACACTTCAAAATCTAGCTTTGGAAGCAAATCAATTAACTGGATCTCTTCCAAAGGAGTTGGGTTATCTCCAGAACTTACAGAAAATTCAGCTTTCTGCAAATGGATTTACGGGAGAATTGCCAGACACTTTTTCTAACCTGTCAAACTTAATTTACTTTATGATCGGCAGCAACAACTTAACTGGGAAAATACCACAGTTCCTTCAAAATTGGACACAGATTTTGAGAATAGATCTGCAAGCAAGTGGACTTCAAGGATCTATTCCTACAGGAATGCCACTTTTAAAGAACTTAAATGACTTGCGGATCAGTGATATTACTGGGAACTCAGCTTTTCCTCATTTGGAGGGTATGCAACAGTTGCAATACTTAACCTTAAGGAGCTGTGGTATAACTGGAGAGATCCCTTTATACTTGGGAGCTTTTCTGAATCTTAAGCGCTTGGATTTGAGCTGCAACATGTTATCTGGGAAAATTCCCCTAAGCATGGAAAACTTGATTCATACCAACATTATATTTCTAACCAGCAATAAGCTGTATGGCCCTGTTCCTGATTGGATGCTTACCAGCAAAAACAATATTGATCTTTCTTATAATAACTTCACTTTTGAAGGGCGTGGTCAAACATGCCAACAAGGAAATGTCAACTTGCTTGGGAGCTCTCTCAAAAACAATGGACAAATCAAGAGCGTGCCTTGCTTGGATTCCATTCCTTGTAACGGAGCTAGCTGGTCTTTGTACATTAATTGTGGAGGTGATGCTGTGACTATCTATGAAAACAAAACCTCCAAGACATACGAACAAGACAATGATGGTACTAATGGAGTCTCTACATTTCGCTTGGGTACCAATTGGGCAGTTAGTAGCACTGGCTCTTTCCTGGATTCTAGAGATAACAATAACTTTATAGCAACGGCTACACAAAACCTCTCCATGCCAAACTCTCAGTTATATGATACTGCACGTCTCTCTCCTTTATCTCTTACCTATATTGCGTTTTGTTTATTAAATGGGAATTACAGTGTTAGCCTGCACTTTGCCGAAATAGTAATCCATGATTTTAATGGATTTGTCAGTCCTGGTAAACGAATATTTGATGTTTTTATACAGGGAAAACTTGTTTTAAAGGATTTTAATATCAGAGATGAAGCTGATGGTTCAGATAAAGCTGTTGTTAGAACTTTTCCTGCAGTAGTTACAACGAAGACATTGGAAATTAAACTCTATTGGGCTGGTAAAGGAACAACATCTGTTCCTACAAGTGGAACATATGGTCCTCTTATATCAGCTATATCTGTAAATCCCCATTTCAAACCTCCAAGGAAAAGCAGCATGCTTCATCGTTTGTTGATCGGAATTTCTTGTGCAACAATTTTTTCTTTGGTTCTCCTTGTGTTTTTTTCTTGGAAGAAAGGTTATTTCAGGTGTAACGATGGCAAGAGCAATGATCTGAGAGGTCTGGAAGCTGTGTCATTTTCTTTAAGGCAAATTCTAGCTGCCACTAGCAACTTCAGTTCTACCAACAAGATTGGTGAAGGCGGTTTTGGACCTGTGTATAAGGGCCAGCTATCAGATGGTACAATAATAGCAGTGAAGCAGCTCTCTTCAAAGTCGACTCAGGGAAATCATGAATTTATTAATGAGATAGGCATGATTTCTGCATTGCAACACCCAAATCTTGTAAAGCTTTATGGATGCTGTGTTGAAGGAAATCAGCTTTTGTTGGTTTATGAGTATATGGAAAACAATAGCCTTGCCCGTGTTCTTTATGGGCCAGAGAAGTATCAATTGAAGCTAGACTGGCCGACAAGGCAAAAGATTTGTGTTGGCATAGCAAAAGGTCTTGCTTACCTTCATGAAGAGTCAACGCTGAAAATTGTTCATAGAGACATAAAGGCTACAAATGTGTTGTTAGACGCTGATCTTAGCCCCAAAATATCAGATTTTGGATTGGCAAAGCTTGATGAGAAAGAAAATACTCATATTAGTACACGAATAGCTGGAACAATCGGATATATGGCACCCGAGTATGCGACACGAGGATACTTGACCGAAAAGGCAGATGTCTACAGCTACGGCATTGTAACATTGGAGATTGTATCCGGGAAGTGCGTATCTAGCTACACAAACGAAGAACAATATCATCTTCTGGATGTGGCATATATAGCGAAAGAGAAAGGGGACTTGCTCTCTCTTGTAGATAAGAGGCTGGAAAATGAGTTCAACCAGGAAGAAGCTTTGAGAGTGATAAGAGTAGCCATTCTATGTGCACATTCATCACCCGCTCATAGGCCGTCGATGTCCAATGTGGTGAAGATTCTTAGTGGAGAAATGGGCATCCCGAACTTTGTTCCGGATCCGTATCGTTTCAGAGACAGTGTAATCCATCACGGGCACAATGAGAACTCTGCAGCCTCACAGAGCAATGTCCAACCACTCTTCACTGGTACTTTTGAAGGTAATGGTAGGGAGTATGGATCAACAAGTGATTCTGCCACCTACGATTCTGAGCATTACTCTTTCCGACTAGTCTCTGATTCATAAAGCCATGTTAGGAATGAGGCAATGGTGTTGTTATTTATGTTTTTTATTCTGTTTATGATCATAGTTCTGAGCTAATTCTGAATATCATAAGATTTTAGTGCTAGATTTGTATTAGCCATTAACTTTGTGATATGTCAATAAATTTTATTTAATAGTTTTCATGCTTACAGAAATTCAAGTTAATGTTGCTATTTTACTCTATGTTGCTGAACCTCCAATAATTTAAAGTTAG

Network for GWHGAAEX000494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.32	LRR_1	300	322	1.1
PF11721.7	Malectin	402	587	5.90E-38
PF07714.16	Pkinase_Tyr	663	930	4.90E-51

Protein Sequence

>GWHPAAEX000494
MLLAKLLFSLLSIPPLLPAALSLSTPLPPEEIEALRLIAKALKKTNWNFSVDPCSQEGSWVTHNAPNGFENSVWCNNCTADGRVCHVTSIVLKSQNLVGTLPHEMALLPFLQEIDLTRNFLNGTIPDDWAVLPLVNVSLLGNSISGQVPSWIGNITTLQNLALEANQLTGSLPKELGYLQNLQKIQLSANGFTGELPDTFSNLSNLIYFMIGSNNLTGKIPQFLQNWTQILRIDLQASGLQGSIPTGMPLLKNLNDLRISDITGNSAFPHLEGMQQLQYLTLRSCGITGEIPLYLGAFLNLKRLDLSCNMLSGKIPLSMENLIHTNIIFLTSNKLYGPVPDWMLTSKNNIDLSYNNFTFEGRGQTCQQGNVNLLGSSLKNNGQIKSVPCLDSIPCNGASWSLYINCGGDAVTIYENKTSKTYEQDNDGTNGVSTFRLGTNWAVSSTGSFLDSRDNNNFIATATQNLSMPNSQLYDTARLSPLSLTYIAFCLLNGNYSVSLHFAEIVIHDFNGFVSPGKRIFDVFIQGKLVLKDFNIRDEADGSDKAVVRTFPAVVTTKTLEIKLYWAGKGTTSVPTSGTYGPLISAISVNPHFKPPRKSSMLHRLLIGISCATIFSLVLLVFFSWKKGYFRCNDGKSNDLRGLEAVSFSLRQILAATSNFSSTNKIGEGGFGPVYKGQLSDGTIIAVKQLSSKSTQGNHEFINEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARVLYGPEKYQLKLDWPTRQKICVGIAKGLAYLHEESTLKIVHRDIKATNVLLDADLSPKISDFGLAKLDEKENTHISTRIAGTIGYMAPEYATRGYLTEKADVYSYGIVTLEIVSGKCVSSYTNEEQYHLLDVAYIAKEKGDLLSLVDKRLENEFNQEEALRVIRVAILCAHSSPAHRPSMSNVVKILSGEMGIPNFVPDPYRFRDSVIHHGHNENSAASQSNVQPLFTGTFEGNGREYGSTSDSATYDSEHYSFRLVSDS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.430
SRP064423	SRR2545915	Juvenile tuber	12.360
SRP108465	SRR5643513	five period of Gastrodia elata	6.920
	SRR5643514	five period of Gastrodia elata	7.740
	SRR5643515	five period of Gastrodia elata	6.850
	SRR5643524	five period of Gastrodia elata	8.010
	SRR5643525	five period of Gastrodia elata	4.030
	SRR5643528	five period of Gastrodia elata	4.660
	SRR5643658	five period of Gastrodia elata	4.600
	SRR5643659	five period of Gastrodia elata	6.660
	SRR5643660	five period of Gastrodia elata	6.320
	SRR5643661	five period of Gastrodia elata	6.470
	SRR5643662	five period of Gastrodia elata	5.100
	SRR5643663	five period of Gastrodia elata	6.730
	SRR5643664	five period of Gastrodia elata	5.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.510
SRP279888	Gastro	Gastrodia elata tuber	6.72
	Juven	Juvenile tuber	7.95
	Mother_Gastro	Mother tuber of Gastrodia elata	7.23
	Mother_Juven	Mother tuber of Juvenile	5.06