Detail information of GWHGAAEX000501/evm.TU.scaffold_1.223


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-13FOG: PPR repeat
nrgi|720007395|ref|XP_010258291.1|1.20E-15PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Nelumbo nucifera]
Swissprottr|Q9LXF2|PP385_ARATH2.00E-14Pentatricopeptide repeat-containing protein At5g15300
trEMBLtr|F6H5U9|F6H5U9_VITVI8.00E-16Putative uncharacterized protein {ECO:0000313|EMBL:CCB47570.1}
TAIRAT5G153001.00E-13Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000899539209955915+
Transcript Sequence

Network for GWHGAAEX000501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.510
SRR2545915Juvenile tuber3.720
SRP108465SRR5643513five period of Gastrodia elata0.550
SRR5643514five period of Gastrodia elata1.730
SRR5643515five period of Gastrodia elata1.610
SRR5643524five period of Gastrodia elata2.680
SRR5643525five period of Gastrodia elata0.090
SRR5643528five period of Gastrodia elata0.050
SRR5643658five period of Gastrodia elata0.070
SRR5643659five period of Gastrodia elata1.790
SRR5643660five period of Gastrodia elata2.920
SRR5643661five period of Gastrodia elata2.390
SRR5643662five period of Gastrodia elata3.640
SRR5643663five period of Gastrodia elata2.540
SRR5643664five period of Gastrodia elata4.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.390
SRR6049655Rhizomagastrodiae_C368-T10_good_12.910
SRR6049656Rhizomagastrodiae_C368-T07_good_15.840
SRR6049657Rhizomagastrodiae_C368-T07_good_18.580
SRR6049658Rhizomagastrodiae_C368-T04_good_13.980
SRR6049659Rhizomagastrodiae_C368-T04_good_13.490
SRR6049660Rhizomagastrodiae_C368-T01_good_14.820
SRR6049661Rhizomagastrodiae_C368-T04_good_16.370
SRR6049662Rhizomagastrodiae_C368-T01_good_12.580
SRR6049663Rhizomagastrodiae_C368-T01_good_13.900
SRR6049664Rhizomagastrodiae_C368-T10_good_11.200
SRR6049665Rhizomagastrodiae_C368-T10_good_11.200
SRP279888GastroGastrodia elata tuber 0.95
JuvenJuvenile tuber3.92
Mother_GastroMother tuber of Gastrodia elata 3.10
Mother_JuvenMother tuber of Juvenile 4.42