Gene detail

Detail information of GWHGAAEX000506/evm.TU.scaffold_1.232

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|1173622\|gb\|AAB37230.1\|	homeobox protein [Phalaenopsis sp. SM9108]
Swissprot	tr\|Q0J9X2\|ROC2_ORYSJ	Homeobox-leucine zipper protein ROC2
trEMBL	tr\|Q40988\|Q40988_9ASPA	Homeobox protein {ECO:0000313\|EMBL:AAB37230.1}
TAIR	AT4G04890	protodermal factor 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000008	10220229	10233150	+

Transcript Sequence
>GWHTAAEX000506 AAGAAATTTTCAAAGCATATGCATCTTCTCTCTCTCTATCCTTATCTCACTTCAGCAATAACACCACCTTGTCATAAATGCAATTGCACCCTCTCAACTCTTCAATAACTGCGCTCTTCATCCCTCCCTTTCTTCTTTCCAACACTTTCCTCCTCTCCTTTTTCCGAGCAACCTTTCGCTTCTCCCATGGCGTTTTCCCGACCCTTTTCGTCTCTCTCTTTTTTTACTTGAACACTTCATCTTCTCTCACCTTTGCATGCGCTCACGTAAATTTTAATTATCTCTTCTGCGCTTCTTTTCCCTAAATCTGCTGAAACTGAGCTTATAAGAAGAAATGAGAGACGAAATTAGGGTTTCGTGGAGCTAAAATATGCCCGTTGCCTTCATGATTTCGTCTTTGATTATCGGCAGGAACTCTTCAGCGTTGACCATAGCTCAGACAAACATGCTGGAAGGGCAGCAGGGGGCCTTCGAATTAGCTGCAGCGGAGAGCGAAATGATTTTGAGGCATCGAGAGGAGGATTTCGAGAGCAAGTCCGGAAGTGATAATGTGGACTGTGCGTCCGGGGATGAGCAGGACCCAAATCAGCGGCCGAGAAAGAAGAGGTACCACAGGCACACGCAGCATCAAATTCAGGAGATGGAAGCTTTCTTCAAGGAATGCCCGCATCCGGACGACAAGCAGAGGAAGGAACTGAGTCGGGAGTTGGGATTGGAGCCTCTCCAAGTCAAGTTCTGGTTTCAGAATAAGCGCACCCAAATGAAGACGCAGCATGACAGGCAGGAGAATTCGCAGTTGAGGGCAGAGAGCGAGAAGCTGAGGAGCGAGAATCTTCGGTACAAGGAGGCGCTGAACAGCGCGTCCTGCCCCAACTGCGGCGGGCCAGCTTCCCTCGGCGAGATGTCCTTCGACGAGCAGCACCTCAGGATAGAGAACGCCAGGCTCAGAGAAGAGATCGACAGGATATCTGGCATTGCCGCAAAGTACGTGGGCAGGCCGATGGGCTCCCTCCTCTCGTCCCGGCCGTTAGATCTCGGGGCGGGCGGCGGGATCTTGTCAGCTTCCGTGGGGCAGCAGGAGGCTGAGAAGTCGATGATTGTGGAGCTGGCTGTGGCGGCCATGGAAGAGCTGGTGAGGATGGCGCAGCTGGGAGACCCGCTCTGGGCGGCTGAGGTTCTGTGCGAGGAAGAGTATGTGTTGAATTTTCCGAGAGGAATCGGGACCAAGCCTTTCGGCTTCAAGACCGAGGCTTCCAGGGAGACTGCGGTCGTCATCATCAGTCATCTCAATCTCCTTCAAATTCTCATGGACGCGAATCAATGGTCCACAATGTTCTCCGGGATTGTATCGAGGGCCATGACTCTCGAAGTACTGTCCACTGGCGTTGCAGGAAATTACAACGGTGCATTGCAAGTGATGACAGCTGAATTCCAAGTTCCTTCCCCTCTCGTTCCGACTCGGGAGAGCTACTTCGTTCGATACTGCAAGCATCATCCCGACGGAACTTGGGCGGTCGTCGATGTTTCGTTGGACGGACTCCGCCCAAGCCCTGTCGTGCGATGCCGAAGGCGGCCGTCGGGTTGCTTAATCCAAGAATTGCCCAACGGCTACTCTAAGGTGACATGGGTTGAGCATGTTGAAGCGGATGATAGATCCGTTCACAGTATCTACAAGCTATTGGTGAACTCAGGCCTTGCATTTGGGGCCAAAAGATGGGTTTCCACTCTTGACCGGCAGAGCGAGCGGCTTGCCAGCGCCATGGCAACCAACATACCTTGCGGAGAAATTGGAGTGATAACAAGCCCAGAGGGCAGAAAGAGCATGTTGAAGCTAGCGGAGAGGATGGTACTTAGTTTTTGCGGAGGGGTGAGTGCCTCCACAACTCATCAGTGGACCACATTATCAGGAAGCGGGGCCGAGGATGTGAGGGTGATGACGCGAAAAAGCATCGACGATCCAGGCAGGCCTCCCGGTATTGTTCTCAATGCGGCCACTTCGTTTTGGCTGCCCGTCTCTCCCAAAAGGGTTTTTGATTTCCTCCGCGATGAGAGCTCTCGGAGCGAGTGGGATATTCTCTCCAACGGTGGCGTAGTTCAGGAGATGGCTCATTTAGCTAATGGTCGAGATCACGGCAATTGCGTCTCCCTGCTTCGTGTTAATAGCACAAATTCTAATCAAAGCAACATGCTGATACTCCAAGAAAGCAGCATTGACCCGACGGGCTCGTATGTGATTTACGCTCCGGTGGACGTTGTTGCAATGAACGTAGTCCTCAATGGCGGTGATCCTGACTACGTGGCTCTCTTGCCTTCGGGCTTTGCTATCCTCCCCGATGGATCCGAAGGAGCTCAGGCCGGCTCAGGTGGATCCCTCCTCACGGTGGCATTTCAGATATTAGTGGATTCCATGCCGACCGCCAAGCTTTCGCTCGGCTCGGTTGCCACAGTCAACAGCCTGATTGCCTGCACCGTCGAAAGGATCAAGGCCGCGGTTTCAGCCGACAGCCCTCCAGTCAGCCCAAGGCCGTCCCTTACAAATCAATGGAAATGAGGAGGATTAAGCATCTCTGAGGGGAAACATTGGGAGGAATTATTGAATGCTTGAAGCAGTCAAGAACGCACCTCAGACAGTCCTTGCCACGTGGCGTGTTTGTGCTGTTCATGGCAACGTAGGTGCAAGGGTGTTGGTTCGGGTATTGACTCTTCCGCTCTGCTCTTTTCTTCAACGCTCTCTTTCTCTGTACTTTTGCAGGCAAGG

Network for GWHGAAEX000506

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	77	132	6.10E-18
PF01852.18	START	246	459	2.30E-54

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.270
SRP064423	SRR2545915	Juvenile tuber	1.520
SRP108465	SRR5643513	five period of Gastrodia elata	3.010
	SRR5643514	five period of Gastrodia elata	2.020
	SRR5643515	five period of Gastrodia elata	1.910
	SRR5643524	five period of Gastrodia elata	2.200
	SRR5643525	five period of Gastrodia elata	8.810
	SRR5643528	five period of Gastrodia elata	13.830
	SRR5643658	five period of Gastrodia elata	5.680
	SRR5643659	five period of Gastrodia elata	6.650
	SRR5643660	five period of Gastrodia elata	3.710
	SRR5643661	five period of Gastrodia elata	8.850
	SRR5643662	five period of Gastrodia elata	5.340
	SRR5643663	five period of Gastrodia elata	3.220
	SRR5643664	five period of Gastrodia elata	5.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.400
SRP279888	Gastro	Gastrodia elata tuber	1.67
	Juven	Juvenile tuber	0.94
	Mother_Gastro	Mother tuber of Gastrodia elata	11.22
	Mother_Juven	Mother tuber of Juvenile	32.51