Detail information of GWHGAAEX000508/evm.TU.scaffold_1.234


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428224444|ref|YP_007108541.1|0tryptophan synthase subunit beta [Geitlerinema sp. PCC 7407]
KOGKOG13950Tryptophan synthase beta chain
nrgi|698493141|ref|XP_009792865.1|0PREDICTED: tryptophan synthase beta chain 1 [Nicotiana sylvestris]
Swissprottr|O50046|TRPB_CAMAC0Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|F6H9B6|F6H9B6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48809.1}
TAIRAT4G270700tryptophan synthase beta-subunit 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081027761810287193-
Transcript Sequence

Network for GWHGAAEX000508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP874162.40E-48
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01696trpB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0000162Biological Processtryptophan biosynthetic process
GO:0006568Biological Processtryptophan metabolic process
GO:0004834Molecular Functiontryptophan synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.950
SRR2545915Juvenile tuber50.510
SRP108465SRR5643513five period of Gastrodia elata49.570
SRR5643514five period of Gastrodia elata53.800
SRR5643515five period of Gastrodia elata54.530
SRR5643524five period of Gastrodia elata48.010
SRR5643525five period of Gastrodia elata56.990
SRR5643528five period of Gastrodia elata54.530
SRR5643658five period of Gastrodia elata46.970
SRR5643659five period of Gastrodia elata75.350
SRR5643660five period of Gastrodia elata81.540
SRR5643661five period of Gastrodia elata80.270
SRR5643662five period of Gastrodia elata105.630
SRR5643663five period of Gastrodia elata131.740
SRR5643664five period of Gastrodia elata103.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_165.480
SRR6049655Rhizomagastrodiae_C368-T10_good_141.450
SRR6049656Rhizomagastrodiae_C368-T07_good_166.890
SRR6049657Rhizomagastrodiae_C368-T07_good_155.530
SRR6049658Rhizomagastrodiae_C368-T04_good_154.640
SRR6049659Rhizomagastrodiae_C368-T04_good_148.440
SRR6049660Rhizomagastrodiae_C368-T01_good_160.340
SRR6049661Rhizomagastrodiae_C368-T04_good_157.600
SRR6049662Rhizomagastrodiae_C368-T01_good_176.220
SRR6049663Rhizomagastrodiae_C368-T01_good_159.970
SRR6049664Rhizomagastrodiae_C368-T10_good_167.820
SRR6049665Rhizomagastrodiae_C368-T10_good_167.820
SRP279888GastroGastrodia elata tuber 83.34
JuvenJuvenile tuber55.88
Mother_GastroMother tuber of Gastrodia elata 26.73
Mother_JuvenMother tuber of Juvenile 27.36