Detail information of GWHGAAEX000511/evm.TU.scaffold_1.237
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672165708|ref|XP_008802767.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SVP7|PP307_ARATH | 7.00E-138 | Pentatricopeptide repeat-containing protein At4g13650 |
| trEMBL | tr|A5AE49|A5AE49_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN60118.1} |
| trEMBL | tr|A5AE49|A5AE49_VITVI | 8.00E-70 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN60118.1} |
| trEMBL | tr|A5AE49|A5AE49_VITVI | 3.00E-20 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN60118.1} |
| TAIR | AT1G16480 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000008 | 10334345 | 10337757 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000511
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 8 | 36 | 5.80E-05 |
| PF13041.5 | PPR_2 | 102 | 149 | 1.40E-07 |
| PF01535.19 | PPR | 178 | 203 | 0.00015 |
| PF13041.5 | PPR_2 | 204 | 249 | 1.30E-10 |
| PF01535.19 | PPR | 281 | 304 | 0.054 |
| PF13041.5 | PPR_2 | 307 | 354 | 9.40E-10 |
| PF01535.19 | PPR | 383 | 409 | 0.034 |
| PF01535.19 | PPR | 411 | 441 | 0.0028 |
| PF01535.19 | PPR | 513 | 539 | 0.00026 |
| PF01535.19 | PPR | 617 | 645 | 1.60E-06 |
| PF01535.19 | PPR | 651 | 677 | 0.87 |
| PF01535.19 | PPR | 754 | 781 | 0.37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.700 |
| SRR2545915 | Juvenile tuber | 3.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.610 |
| SRR5643514 | five period of Gastrodia elata | 2.810 | |
| SRR5643515 | five period of Gastrodia elata | 3.300 | |
| SRR5643524 | five period of Gastrodia elata | 2.500 | |
| SRR5643525 | five period of Gastrodia elata | 2.250 | |
| SRR5643528 | five period of Gastrodia elata | 1.700 | |
| SRR5643658 | five period of Gastrodia elata | 1.630 | |
| SRR5643659 | five period of Gastrodia elata | 3.280 | |
| SRR5643660 | five period of Gastrodia elata | 3.770 | |
| SRR5643661 | five period of Gastrodia elata | 3.810 | |
| SRR5643662 | five period of Gastrodia elata | 3.870 | |
| SRR5643663 | five period of Gastrodia elata | 3.790 | |
| SRR5643664 | five period of Gastrodia elata | 3.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.08 |
| Juven | Juvenile tuber | 3.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.69 | |
| Mother_Juven | Mother tuber of Juvenile | 2.54 |