Detail information of GWHGAAEX000515/evm.TU.scaffold_1.241


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|375143372|ref|YP_005005813.1|7.00E-12RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
KOGKOG01182.00E-141FOG: RRM domain
nrgi|672118013|ref|XP_008782204.1|0PREDICTED: polyadenylate-binding protein RBP47-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9LEB3|RBP47_NICPL7.00E-160Polyadenylate-binding protein RBP47
trEMBLtr|F2CSQ8|F2CSQ8_HORVD2.00E-179Predicted protein {ECO:0000313|EMBL:BAJ85879.1} (Fragment)
TAIRAT1G474902.00E-141RNA-binding protein 47C

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000081038036510400020-
Transcript Sequence

Network for GWHGAAEX000515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1841507.50E-13
PF00076.21RRM_11772475.90E-15
PF00076.21RRM_12813441.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms31.010
SRR2545915Juvenile tuber29.280
SRP108465SRR5643513five period of Gastrodia elata52.890
SRR5643514five period of Gastrodia elata46.050
SRR5643515five period of Gastrodia elata56.670
SRR5643524five period of Gastrodia elata51.650
SRR5643525five period of Gastrodia elata27.160
SRR5643528five period of Gastrodia elata52.080
SRR5643658five period of Gastrodia elata26.290
SRR5643659five period of Gastrodia elata83.320
SRR5643660five period of Gastrodia elata80.790
SRR5643661five period of Gastrodia elata74.810
SRR5643662five period of Gastrodia elata79.210
SRR5643663five period of Gastrodia elata69.260
SRR5643664five period of Gastrodia elata57.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.440
SRR6049655Rhizomagastrodiae_C368-T10_good_155.910
SRR6049656Rhizomagastrodiae_C368-T07_good_154.050
SRR6049657Rhizomagastrodiae_C368-T07_good_142.360
SRR6049658Rhizomagastrodiae_C368-T04_good_140.550
SRR6049659Rhizomagastrodiae_C368-T04_good_140.210
SRR6049660Rhizomagastrodiae_C368-T01_good_151.550
SRR6049661Rhizomagastrodiae_C368-T04_good_144.130
SRR6049662Rhizomagastrodiae_C368-T01_good_166.130
SRR6049663Rhizomagastrodiae_C368-T01_good_168.150
SRR6049664Rhizomagastrodiae_C368-T10_good_172.300
SRR6049665Rhizomagastrodiae_C368-T10_good_172.300
SRP279888GastroGastrodia elata tuber 64.75
JuvenJuvenile tuber80.65
Mother_GastroMother tuber of Gastrodia elata 70.13
Mother_JuvenMother tuber of Juvenile 81.47